Basic Information

Insect: Cheilosia pagana
Gene Symbol: Clamp
Assembly: GCA_936435595.1
Location: CAKZFE010000010.1:2879077-2882079[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.9e-05 0.0017 18.9 3.7 1 23 127 149 127 149 0.99

2 7 6.7e-06 0.0006 20.4 1.0 1 23 382 404 382 404 0.98

3 7 4e-06 0.00036 21.1 0.1 1 23 410 432 410 432 0.99

4 7 2.7e-06 0.00024 21.6 3.2 1 23 438 460 438 460 0.99

5 7 1.5e-06 0.00014 22.4 0.4 1 23 466 488 466 488 0.98

6 7 1.3e-06 0.00012 22.6 0.4 1 23 494 516 494 516 0.98

7 7 7.5e-05 0.0068 17.1 0.2 1 23 522 544 522 544 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.9e-05	0.0017	18.9	3.7	1	23	127	149	127	149	0.99
2	7	6.7e-06	0.0006	20.4	1.0	1	23	382	404	382	404	0.98
3	7	4e-06	0.00036	21.1	0.1	1	23	410	432	410	432	0.99
4	7	2.7e-06	0.00024	21.6	3.2	1	23	438	460	438	460	0.99
5	7	1.5e-06	0.00014	22.4	0.4	1	23	466	488	466	488	0.98
6	7	1.3e-06	0.00012	22.6	0.4	1	23	494	516	494	516	0.98
7	7	7.5e-05	0.0068	17.1	0.2	1	23	522	544	522	544	0.96

Sequence Information

Coding Sequence: ATGGAAGATATAACCAAAACCATTATGTTCACtacaaatacaatacaaaaCGGACAGCCAACGATTCAATATCAAACGGCGGATGGCACAATTCTAAAGCAGCCAAAAATAGAGGGCCAGAAAAATCAGCAAGATTATCCCACATTTTGTTACACAACAACAAATGGTAACGCGACGACAGTTAATTTGGCTCAGCTAACCACAGACGACAACAAGACATGTTACATTGCACAGCCGATAAGTGGTTACAACTATGCACTGGTCAATCAAATGCAACTCAACCAAGGAGGGACGGTCGGTATCGCCACAGTTGATAATCAGGGACGTTTgcaagtaataaacaaacccaTTGCAACAAACACAATATCCAATATCAGCTTTAAGTGCGATGTTTGCGGCCTTATGTTCTCCCACCTGACACTGCTCAATCATCACAAGCGTATCCACGCTCAGGAGGGTGGAGACGCCAATCAAGATTCAATCTCTGTCGTGAACGCCCAGGGCCTAGTGCAAACGCAAAACATCATCACAGAGAATGGACAGCCGCTTGGGCAAATCCAAATCGTTGCCACCGAGTCGCTGGAGCCTGCCACCTCGCATGGCATGCAACAAACGGCCAACGAAGTGACAGTGACCACAGCGAAAACACTCACTCTAGAGAAATCCAAATGCGTATCATGTGGCGGGCAAATCCTACAGCCCACAAAGCGAAAAGGCCCCAAGATTGTTCGTTGTGATAACTGTGTGAACAACGACAACGGCAATGGCAACGTAATGCAAACGCAAACGACGCAGTCGACCCCAACGCAGATTTTTGTCGCCCCCGATGGCGAGATCAAATTCGAAATGAACGAACTGCCGAGCGGTACCAGTGAGTCCTCGATGGACTCGCTCAGTGCACAAAATATCATTCCAATGCAGCAGGGCAATAATGGAAACGGCGGTGGTGGTCGAAAAAATCaacaccagcaacagcagcacgGAATGATTCAAGACAATGGATGCAATGAAACGATTGTGGGACACCATCCAGTGAAGAAACGAAACCTAGCGACGGTCACCAAGTGCCAGAAGTGCAACGGATCCGGTGTGATATTTGTGGGCGGCAATCAGCGGCAAGTCAAGTCAGAAACACCTAAGCCTTTCACGTGCAACATTTGCGGTGGAACGTTTTCGCGATACTCGAGTCTGTGGTCGCATAAGAAGCTGCATAGCGGCGAGAAGAACTACAAATGTACCATATGCGGCCTGGCGTTCGCTAAAGCGGTGTATTTGAAGAACCACGCCAGGATTCACACTGGCGAAAAACCCTACAAATGCCAAACATGCGGCATGCAGTTCTCCCAGTCACCACATCTCAAAAATCACGAACGAACACACAGCGGCGAGAAACCGTACGTGTGCGAAGTATGCGACAAAGGATTTGCCCGCCACGCCACCCTGTGGAATCACCGTCGAATCCATACCGGCGAAAAACCCTACAAATGTGAAATCTGTGGATCAGCATTCAGTCAGGCAGCTCATCTCAAGAACCACGCCAAGGTGCATTCCGGTGAGAAGCCATTCAAATGTGATATCTGTTCAGCGGCATTTGCCGATCGATTTGCCCTGAAACGTCATCGAGGAATCCACGAGAAATATGGTCAAACAGCGCCGAGACAATCGCAGCAGAACCACGATGACCAGGTACAAATGGGACAGACAGTCGTCATACATAAGCAGGAAATACCCGAGATGGATGACGAAGCTCAGCACGAAGTTATTATAGCAGGATTATAA
Protein Sequence: MEDITKTIMFTTNTIQNGQPTIQYQTADGTILKQPKIEGQKNQQDYPTFCYTTTNGNATTVNLAQLTTDDNKTCYIAQPISGYNYALVNQMQLNQGGTVGIATVDNQGRLQVINKPIATNTISNISFKCDVCGLMFSHLTLLNHHKRIHAQEGGDANQDSISVVNAQGLVQTQNIITENGQPLGQIQIVATESLEPATSHGMQQTANEVTVTTAKTLTLEKSKCVSCGGQILQPTKRKGPKIVRCDNCVNNDNGNGNVMQTQTTQSTPTQIFVAPDGEIKFEMNELPSGTSESSMDSLSAQNIIPMQQGNNGNGGGGRKNQHQQQQHGMIQDNGCNETIVGHHPVKKRNLATVTKCQKCNGSGVIFVGGNQRQVKSETPKPFTCNICGGTFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHEKYGQTAPRQSQQNHDDQVQMGQTVVIHKQEIPEMDDEAQHEVIIAGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00672376;
90% Identity: iTF_00724993;
80% Identity: -