Basic Information

Insect: Cheilosia pagana
Gene Symbol: -
Assembly: GCA_936435595.1
Location: CAKZFE010000023.1:4759178-4761230[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0013 0.12 13.2 0.8 2 23 112 133 111 133 0.95

2 10 0.01 0.92 10.3 2.2 1 23 213 236 213 236 0.92

3 10 0.23 21 6.1 0.9 2 22 244 264 243 264 0.84

4 10 4.2e-07 3.7e-05 24.2 3.8 1 23 313 335 313 335 0.97

5 10 5.6e-07 5.1e-05 23.7 2.0 1 23 342 364 342 364 0.98

6 10 5.8e-07 5.2e-05 23.7 1.5 3 23 379 399 378 399 0.98

7 10 1.9e-06 0.00017 22.1 0.4 1 23 405 427 405 427 0.99

8 10 2.1e-06 0.00018 22.0 0.2 1 23 433 455 433 455 0.98

9 10 8.4e-08 7.5e-06 26.3 0.2 1 23 459 481 459 481 0.99

10 10 0.0041 0.37 11.6 0.2 1 19 483 501 483 504 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0013	0.12	13.2	0.8	2	23	112	133	111	133	0.95
2	10	0.01	0.92	10.3	2.2	1	23	213	236	213	236	0.92
3	10	0.23	21	6.1	0.9	2	22	244	264	243	264	0.84
4	10	4.2e-07	3.7e-05	24.2	3.8	1	23	313	335	313	335	0.97
5	10	5.6e-07	5.1e-05	23.7	2.0	1	23	342	364	342	364	0.98
6	10	5.8e-07	5.2e-05	23.7	1.5	3	23	379	399	378	399	0.98
7	10	1.9e-06	0.00017	22.1	0.4	1	23	405	427	405	427	0.99
8	10	2.1e-06	0.00018	22.0	0.2	1	23	433	455	433	455	0.98
9	10	8.4e-08	7.5e-06	26.3	0.2	1	23	459	481	459	481	0.99
10	10	0.0041	0.37	11.6	0.2	1	19	483	501	483	504	0.95

Sequence Information

Coding Sequence: ATGAATAAAGCGGAAAAGAGTTCCATGGATTTGGAATCCAAATCGCAGTCCTCTGGAGAAGAATACTCTTCGAAGAGTTGGGATGAAGAGGAGGACAAAATCACATCCAGAACCCGTAGTGGAACTATCCGCAAGAATAGTCGTTTGGCGaagcagaaaagaaaaactcacaccAAGGTCGAAAcatcaaaaaattcgaaaaagccAACTGAAGTTGTGGAAAAACCTACCACGGAGGTATCTTTTGATGCAGATGCGGTTTCACTTGAACCGGACATACTTGAATCAGACATTGAAGAGGATGAATGCATACCAAACGGTACAAAGTCAATAGAATGTTTCGTCTGTGGCTGTAGACTAAGTAAAATCTACAATTTACGTCGGCACATGGCTGGCCACGCGAATGGTGAGTCCTTCGACATGGAAGCCTTTGAAAATTCGGAAATATTCAAAGCACTCAACCCGCACAAGAGGAAGATCGATTCGAATGTAATTAAGAATTTCGTGATCCAGGAAATCAAAGCAAAGCGCTACTCCCAGTTGTATTGCATCCTCAGTGAGGCAGCCACTGAGCTGCACATCAGTGATTCCGAAACCGATTCAGATGGAGCCTGTGACCTTATACCTAGCAACAACTATCGATGTGAAATCTGCAAAAAGAACTTCGATCGCCGCTACAAGGCACTGTTCCATCAGAAAACCGCCCATTTGAAGACGGAATTTGCAGTCGAATGCGATTATTGCCAGAAAAAGTTTGTCTGCATGAACCTTCTGATATACCACCTGAAAACCCAGTGCGAGAGCGATGAGAAGCCGGAGCCATGTACAGAGCGCTTCATGAAATTTCTTCTCAAAGCCAACCTTGACTACTATGCGAATCTTTCTCAGGCGAGGGAGCAGAAGAAATTGAGCAAGCTAACGGACGCCCCCAAGTCGTACACATGTAAGGAATGCAATAGGACATTCACTCGGCAGGAACACCTAAATCGCCATAAGGCTGTGCACCTGCCCGACGAGATGAAGTTCGAGTGCGCTGTTTGCAATCGACGCTTCAATCGAAAGGACAACATGCGTTCGCACATGAAGACACACACCGAAGAGGGAGCGCTTATTGCCGAGTCTCGGAAAATCCTTTGCTCCCGCTGCGGACGTAGTTTTAGCAGTAAATCCAACTACGTTGTGCACATGCGGCGTCACACCGGCGAAAAGCCGTACAAGTGCGACGTCTGCGGTAAGGGATTTCCCAAGTCGACAGATTTGAACTCGCACAAGATCACCCACTCGGGGGAGAAGAATTTCATCTGTACGATTTGCAATAGGCCGTTTGCAAGGTCAGCCGTTCTTTCGAAGCACATGCGAGTGCACAAAGGTCCCTATCAGTGTACGGTGTGTGATAATGTCTTCAACAGGCCAAGTGCATTGACAGCTCATTTGCGAACGCATTCGCATAGCTGTGCTACGTGCAGTGTGACGTTTGACTCAAAGAGTGACTTGGAGGCGCATTTCGTTGCTACAGGTCACAGTAACGAGCCTAGGCGGTTAATAGTGATTAGAGAAGCTGCCAAGACAAAGGATACCGCACCGCCATTAACACAACATACACCATCACCTCCACCCCCGCTACCACCAGTACAACAAATAAGTGAAGATCCATTGgaaattaaagaagaagaatGGCGAACGACAAAAGTTAAAGTTCCTGCAAACGAAGTCATTCAGAGCGTATTGCAGAGATCAATAACCACAGCCAGTGCTGAAGTTGGCGTGAGTTCTAGTATAAAAGACGAAGCGGCTTCTGAGAATGAATCTTTAATGCCGGCGTATTCACCGTTAAACGATGGGTACGAGGACGATATGCAGTATGATTGGTAA
Protein Sequence: MNKAEKSSMDLESKSQSSGEEYSSKSWDEEEDKITSRTRSGTIRKNSRLAKQKRKTHTKVETSKNSKKPTEVVEKPTTEVSFDADAVSLEPDILESDIEEDECIPNGTKSIECFVCGCRLSKIYNLRRHMAGHANGESFDMEAFENSEIFKALNPHKRKIDSNVIKNFVIQEIKAKRYSQLYCILSEAATELHISDSETDSDGACDLIPSNNYRCEICKKNFDRRYKALFHQKTAHLKTEFAVECDYCQKKFVCMNLLIYHLKTQCESDEKPEPCTERFMKFLLKANLDYYANLSQAREQKKLSKLTDAPKSYTCKECNRTFTRQEHLNRHKAVHLPDEMKFECAVCNRRFNRKDNMRSHMKTHTEEGALIAESRKILCSRCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHSGEKNFICTICNRPFARSAVLSKHMRVHKGPYQCTVCDNVFNRPSALTAHLRTHSHSCATCSVTFDSKSDLEAHFVATGHSNEPRRLIVIREAAKTKDTAPPLTQHTPSPPPPLPPVQQISEDPLEIKEEEWRTTKVKVPANEVIQSVLQRSITTASAEVGVSSSIKDEAASENESLMPAYSPLNDGYEDDMQYDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00313674;
90% Identity: -
80% Identity: -