Cpag009940.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000030.1:17544490-17549124[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.052 4.7 8.1 0.0 2 23 227 249 226 249 0.96 2 19 0.56 50 4.9 1.2 6 23 258 275 258 275 0.96 3 19 2e-06 0.00018 22.0 0.8 1 23 281 303 281 303 0.98 4 19 0.0014 0.13 13.0 4.1 1 23 309 331 309 331 0.96 5 19 0.0038 0.34 11.7 0.3 1 22 337 358 337 360 0.90 6 19 2.2e-05 0.0019 18.8 0.5 2 23 367 388 366 388 0.95 7 19 0.046 4.2 8.3 0.4 2 23 397 419 396 419 0.95 8 19 0.0046 0.41 11.4 0.8 2 23 427 449 426 449 0.93 9 19 0.0087 0.78 10.6 0.2 1 13 455 467 455 471 0.89 10 19 0.054 4.8 8.1 0.9 2 23 651 673 650 673 0.96 11 19 0.046 4.1 8.3 1.8 6 23 682 699 682 699 0.99 12 19 1.4e-06 0.00013 22.5 1.1 1 23 705 728 705 728 0.98 13 19 1.7e-05 0.0016 19.1 4.9 1 23 735 757 735 757 0.98 14 19 0.00056 0.05 14.3 0.2 3 23 764 785 762 785 0.96 15 19 0.00072 0.065 14.0 0.3 2 23 794 816 793 816 0.96 16 19 0.0005 0.045 14.5 1.0 1 23 823 846 823 846 0.94 17 19 0.08 7.2 7.5 2.2 1 17 852 868 852 869 0.91 18 19 0.038 3.4 8.5 1.1 6 23 912 929 912 929 0.98 19 19 1.7e-05 0.0015 19.1 0.8 1 23 935 957 935 957 0.99
Sequence Information
- Coding Sequence
- atgttgtGCATTTTGTGCTTGAAAGCTAatgatgaaataataaatatgttcGATGCTCACGGACTTACCCTTAATGTCGGAAATATTGTTGCAAAACATTTTTGGCTGCAGCCAAATGAAGACAATCCCAACGCCAAAGTTATCTGCTCCATTTGTTGGAATGCATTAGAATCATTTCACAATTTCTATATGGAAGTAGAACAGGCACATGCTGCGCTAATGACAGTGCTTCCTGAGGAAAAACTATTACAACTTGGAACCACCCCATCATCGAATTCTGGCAAGTATAAGCGCATTGTAAAACTTAACGGCCAGAGTCATATTAATACAAGCGACTATACTATTGCAGGCTTAAAAGTGGAGATTAACGAAGATTTTGAAGTGGCTTGGACAGAATACAATGTTGAAAAGTTTGATAACCCACTTGAAGCTGATGATGGTTGTGATGAAAAATTACAAGATATAAAATCTGAATCGGAGCAGGAGGAATCGaggaaaaaaataagtggaaacagcattttgaagaaaaagaaaccaaaaaaggaaaaagctACCGACGATGACACAACTGATGAAGAAACATTTAAACAGTGGCCAGCGTCCTCTTATGCAGAAGAAAATGATCATAAAATAGACTCTAAACACCTTGATGCTGTAATCGAATCAACTTTAAAGTTATCTTGCAACATTTGCAATGTTCCACTGTCGGGGTATGCTGTCCTCAGGCGTCACTATCGAGTAGCTCACAATGAATTCGGTTACATTGCGTGTTGTGACAAGAAATTCGATAAACGCTGCTCATTAGTTGATCACCttctatttcataaaaatcccgAGTACTTCAAATGTGAAATGTGCGATCGCAACTTTGCAAATCGCAAAAACCTGAAGGTACACTTAAATGCACACGAGAAAAAGCTCATGTTTCATTGTGATAGCTGTCCAAAGAGTTTCCATCAAAAGCAGCTGCTCGAACGGCATAAGGCCATACACATTGTGGATCGCAACTTCAAGTGTGACGAATGTGGCAAgctCTATGCCTCGAAGTTTACACTGGGACAACACGTCTACGGAGTACACAAGCGTGGTTATACCAAAGTGTGTGACCAATGCGGAAAAGTGTTTCGTGACCTGGAAACTTTTCGTCGACATAGGGTGGTTCATACAAACGAACCAAAACCGTTTGTTAGTTGTGACCAATGTGGTATTAAACTTGTAAACAGACGCGTCCTCTTAAAACACCTGAAGAATAAGCACCCGGAAACCACTACCACACAGGTGTGCAATATTTGCGGTACCAATTGTTCCAATATACTTGCTCTAAAGCGCCATATAACATACATGCATAAAAACGAACGAAAGTTCAAGTGCCCCATGTGCGACAAGGGGTTCAAAACGGCCATCGTACTTAAGCCAAGTATAGAAGACTTCAATAAGAGCACAATTTGCTGTTCCTGCTGGCACGCGTTATACTCATTTCACGAGTTCTACCAAAAGGTGGAGAAAGCCCATGATAAGTTTTCAAGTGAGAAATTCCCAATTGAAGATGACCTGTCGAAAAACAATGATTTTGATACGTGTTTCGACTTGTGTGCCAAAGACATTAAAGAAGAGTCGTGTGAGGCACCTAAAGTTGATCTTGAAAAAATTGAAGTACGACAAGAAACCGCTGAGGGAAATATGGAAAAACAAACTCAAATAAAGTCGGATGCGCCTTTAGACAAATTGAGCGCACTCAAACGGCCAACAAAAAAGAGTGAACCCGTGTCCGACACTGATGACTCCACTGACGAtgattataataataatgatgacGACGAAAATGATACTGACTATAAACTACCTGAAAACAAAGAGACCGATAATAATTCCACCGCCAAAAGAGAGTATAACAAGCACCGAATTCCCTGTAAACAGTTTGATGTCCTAATCAAACAGAATATGGAGCTATCCTGTAACGTTTGTCACATTGCGTTGGAGAGTTTTTTCACTCTCAAGGAACACTATAGATCGGCTCACAATAAAATCGgctacgtcacctgttgtgagAAGAAATTCGACAGCCGTCACGCCCTGGTTCATCACATTCTCATGCATAAAGATCCAGAGACATACAAGTGTACGAAATGTGGACGAGTTCTAGCCGACCGCAGGGGCTTGAAGCGACACATGAAAACGACACATGTAAATGAGGATCGTAGCCATCAGTGTCAGAAGTGTAAGAAGGGTTTTCGGCGAAAAGAACTGCTGGAGAAGCATGAAAAAACCCATGTGAGACCTGAGGTGATATGCGAGCTGTGTGGCAAGGTAGTACGCGGCAAGCAGTATCTCAAACAACATCAGTTGCGGGAGCATTCGGGAATACCAAAACAACGTCAACAGTGTCCAAAGTGTGGCGTTTATCTTGCAGATAATTCAACTCTATCCACACATATGAAGTATCAGCATCCAGTTGTTCAAGTTGTACACGAGTGTCATATTTGTGGGAAAATATCAGCCACTGGTTACGGCCTAAAGCGTCACATAGAATACATGCACACACGGGGACGGCCGCATAAGTGTACATTGTGCGAAAAGGCTTTCAAAACGCTCAAGTGTCTTCGGGACTTCGATGATGTTATCGAAGAAACTATGAAACTGTCCTGCGAAATTTGCCAAATTCCACTGTCCACTTTCTTTGTGCCCAAGCAGCACTATCGCTCCGTTCACAATAAAGCTGGCCAAGTCACCTGTTGTGACAAAAAGTTCGACAGTCGCCACAAACTAGTCAGCCACATTCTGCTGCATAAAAATCCAGAGTACTTTAAATGCCAACTGTGCGGCAAAGTCATGGCCAACCGGAAGAGTTTGAATAATCATATGAAAGTCCACGCAGACGATGGAGAGGCAGGTGGACATGATTGCCAAAAGAGTTCTCACGAAAGGGGAAGCTTGATCGCCATTTGCTGA
- Protein Sequence
- MLCILCLKANDEIINMFDAHGLTLNVGNIVAKHFWLQPNEDNPNAKVICSICWNALESFHNFYMEVEQAHAALMTVLPEEKLLQLGTTPSSNSGKYKRIVKLNGQSHINTSDYTIAGLKVEINEDFEVAWTEYNVEKFDNPLEADDGCDEKLQDIKSESEQEESRKKISGNSILKKKKPKKEKATDDDTTDEETFKQWPASSYAEENDHKIDSKHLDAVIESTLKLSCNICNVPLSGYAVLRRHYRVAHNEFGYIACCDKKFDKRCSLVDHLLFHKNPEYFKCEMCDRNFANRKNLKVHLNAHEKKLMFHCDSCPKSFHQKQLLERHKAIHIVDRNFKCDECGKLYASKFTLGQHVYGVHKRGYTKVCDQCGKVFRDLETFRRHRVVHTNEPKPFVSCDQCGIKLVNRRVLLKHLKNKHPETTTTQVCNICGTNCSNILALKRHITYMHKNERKFKCPMCDKGFKTAIVLKPSIEDFNKSTICCSCWHALYSFHEFYQKVEKAHDKFSSEKFPIEDDLSKNNDFDTCFDLCAKDIKEESCEAPKVDLEKIEVRQETAEGNMEKQTQIKSDAPLDKLSALKRPTKKSEPVSDTDDSTDDDYNNNDDDENDTDYKLPENKETDNNSTAKREYNKHRIPCKQFDVLIKQNMELSCNVCHIALESFFTLKEHYRSAHNKIGYVTCCEKKFDSRHALVHHILMHKDPETYKCTKCGRVLADRRGLKRHMKTTHVNEDRSHQCQKCKKGFRRKELLEKHEKTHVRPEVICELCGKVVRGKQYLKQHQLREHSGIPKQRQQCPKCGVYLADNSTLSTHMKYQHPVVQVVHECHICGKISATGYGLKRHIEYMHTRGRPHKCTLCEKAFKTLKCLRDFDDVIEETMKLSCEICQIPLSTFFVPKQHYRSVHNKAGQVTCCDKKFDSRHKLVSHILLHKNPEYFKCQLCGKVMANRKSLNNHMKVHADDGEAGGHDCQKSSHERGSLIAIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -