Cpag009939.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- PZF1
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000030.1:17539871-17543781[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.16 14 6.6 0.2 2 23 285 307 284 307 0.94 2 14 0.017 1.5 9.6 0.6 6 23 316 333 316 333 0.99 3 14 0.00013 0.012 16.3 0.3 1 23 339 361 339 361 0.99 4 14 4.8e-06 0.00043 20.8 0.8 1 23 369 391 369 391 0.99 5 14 1.3e-05 0.0012 19.5 0.3 2 23 398 420 397 420 0.95 6 14 1.1e-06 9.6e-05 22.9 0.5 3 23 428 448 427 448 0.96 7 14 0.0005 0.045 14.5 0.5 2 23 457 479 456 479 0.96 8 14 0.00032 0.028 15.1 0.0 1 23 486 509 486 509 0.94 9 14 0.0041 0.37 11.6 0.3 1 16 515 530 515 531 0.87 10 14 0.00051 0.046 14.4 0.1 2 23 737 759 736 759 0.95 11 14 1.1e-07 9.9e-06 26.0 1.0 1 23 791 813 791 813 0.99 12 14 0.00037 0.033 14.9 5.9 1 23 822 844 822 844 0.98 13 14 0.0029 0.26 12.1 2.5 2 23 851 873 850 873 0.91 14 14 0.00019 0.017 15.8 0.2 3 23 880 900 879 900 0.96
Sequence Information
- Coding Sequence
- ATGCTGTGTATATTATGCGTTCAAACATCCGCAGGCTTTATACATATATTCCAAGATGAGGGAAGTGCCCTAAACATCAAAGAAATCATCATAAAGCACTTTTGGTTGCAgCCAAATGAAAACGATGTTAATTCAAATGTTATATGTGCTTCCTGTTGGGGGGAATTGGAGTCCTTTCATAAATTCTATATGCGAGTTGAAGATGCCCATGTTCGATTACAAAACACCAATGCCAATGACGAGGATGACTTGAAACTGGAAAGGGAAATCGCGGAAGCGCTTAGAGTTGCAAATGCTGAGCAGTTTCATGAGATATTGCCCATACCGGAGGTATTGGAAGCAGACGTAAAAGTAGAAGTTAAGGAAGATACCGATGCAGCCATGCCACCGGTCATTGATCCAGTTGGCAGTGAAGACCATGTTGAATCTGAAGAAGGGTCTTCTTGCGGAAGAAGGGACTCTACAGATTCTGGAAACTCAGTACAGAATGAAACTCCACCTGCGTGCTCTACAAGAAGTCGTACTTCTGCTGAAAGGCCTTACGCCGAAAGTGACTCGTCCAGTGAGGATAAAATTGACAACGATGATACAACCGAAATGCAAACCACATCATCAGACTGGCTAGATCTAGACtcagacgacgatgatgacagTGAGTATGACGTCAGCAGTACAACGACATCTAAATCGaaatcaaaaaagcaaaagacaccTCGAAAAACAACGACAAAGCGTAAatgtaagaaaaacaaagacGGACCTCCAAAGAAGAAGCGCACATCCGAGCAGGTAACTAAGAAAATGGAACGCATGAAAGAGTACGATGAAATAATTGCCAAAAGCATGAAGCTGTCGTGTGATATCTGTTCGGAACCGTTTGCAAACTTTGCCATAATGAAGCGCCACTTTCGGTCTGTTCACAAAGAATGCGGCTATATCGCTTGCTGTGGCAAAAAGTTTCGTAAACGGGGCGTTCTCGTCGATCACATTTGTACGCATCAAAATCCCGAGTACTTCAAGTGTGAGAAATGCGGAAGGATTCTAGCCAGTCGTAAAGGTCTCGATAGTCACATGCTAACCCATGACACGGAAAAGCAGCGCATCTATCAGTGTGATCAGTGCCCGATGAGTTTCTATACAAAACCACTGTTGTCACGCCATTTGCAAACGCATCTTTCCGAACGCAATATAAAGTGTCCCGAATGCGATAAGCGCTTCTCGACGCAAGACATCTTACGCACGCACATAAACAATGTTCACAATGCAGCGTACACCAGAATTTGTGATCAATGTGGAAAGTCGTTCCGTCGGCCGGACGCCTTCCGCAGGCATCAATTGGAGCACGATGGCGTTACACGGCCACTTGTGCCGTGTGAAAAATGCAGCGTGAAACTGACCAGCAAATATGGCCTGAAGAGGCACATGCAATCGATGCACCCCGAGACGGATATGAAACATGTGTGCGACGATTGCGGTAAGATCGCACCCAGTGCAGCGGCCTTACAGCGTCACATATCGTACATGCACAAAATGGAACGGAAATACAAGTGTCCCATGTGCGATAAGGCGTTCAAGAAGACCGGCGGACTTAAGCCGGTTGCGAATGATGGCAATGCAAATGTTATATGCGCGTCCTGTTGGAGTACGTTGAGTTCATTTCACAAATTTTATCTAAAAGTCGAAGAAGCGTATGAGAGTCTGCAAGAGACTTATGCCATTCAAGCAATGGAATCGAAATTAGAATTAGAAATGGACGAAGATATCGAAATCATTCCAAAGACCGAGATAAAGGTTGAAGCTGAAGAAGTTTTCGAACAAACAATCCCATTGGCCATAGTATTTCAATCACAAGGGGATACCGAACagactctgacagcagaaactCCTCCACCTGACGCATGCCTAAGAAAATCCTGCGACGATGAGGCACAATCATCTACTAGTTTCATAAGAAGACGTACTTCCTCTGCCGAAAGCATTGTTAAGATGGAGAATGACAGTGGGAGCTTGTCACCAGACTGCAAGAATCGGAATTCGGATATTGATTATGACGAGGACGAGGAGGATTCTGAAAACAGCTCATCAAAACAACAGACATCGAGAGGAAGAGACCAAAAACACTCTGacgacaaaaatacaaagaagcGAACCCCAAGgagtataaaaatgaatgaaagcgATGAACTTATTGCAAGTACTGTAACATTATCATGCGATATTTGCGGTTTGATATTTCCTAGGTTCACTCCTCTAAAAAAACATTATCGTTTAGCGCATAAACAAAATGGCTACGCCACCTGTTGCGGCATACGATTATTTAAACGTTGTATTCTTGTTGACCACATCAACAGACATAAGAACCCAGAGTATTTCAAGTGTGACGAATGTGGACGAGTACTTTCCACTCGCAAAAACCTGAAACGCCACATGCTAATGCACAGTTTGGATCAACGCACCCGAAACTACCATTGCGATAAGTGTGAGATGAGTTTCTATACAAATAACCTGCTCAGTCGCCACATGCATACGCACGTTTCCGGAAACAATATAAAGTGCACACATTGTGACAAGTTCTTCTCGACGGAGTTCCTTGTGCTTCGGCACGTACACGGTGCTCATAATACTAAATTTAAGATCTGCGATCAGTGTGGAATGTCATTTCGTACGGTTAACGCCCTCAGGCAACATCAGTTGGAACATAACGAAATATACCAAAACCACAaggataaaatagaaaaaaatctcGAATcgataaaacaagaaaatgtacATTCGTAG
- Protein Sequence
- MLCILCVQTSAGFIHIFQDEGSALNIKEIIIKHFWLQPNENDVNSNVICASCWGELESFHKFYMRVEDAHVRLQNTNANDEDDLKLEREIAEALRVANAEQFHEILPIPEVLEADVKVEVKEDTDAAMPPVIDPVGSEDHVESEEGSSCGRRDSTDSGNSVQNETPPACSTRSRTSAERPYAESDSSSEDKIDNDDTTEMQTTSSDWLDLDSDDDDDSEYDVSSTTTSKSKSKKQKTPRKTTTKRKCKKNKDGPPKKKRTSEQVTKKMERMKEYDEIIAKSMKLSCDICSEPFANFAIMKRHFRSVHKECGYIACCGKKFRKRGVLVDHICTHQNPEYFKCEKCGRILASRKGLDSHMLTHDTEKQRIYQCDQCPMSFYTKPLLSRHLQTHLSERNIKCPECDKRFSTQDILRTHINNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGVTRPLVPCEKCSVKLTSKYGLKRHMQSMHPETDMKHVCDDCGKIAPSAAALQRHISYMHKMERKYKCPMCDKAFKKTGGLKPVANDGNANVICASCWSTLSSFHKFYLKVEEAYESLQETYAIQAMESKLELEMDEDIEIIPKTEIKVEAEEVFEQTIPLAIVFQSQGDTEQTLTAETPPPDACLRKSCDDEAQSSTSFIRRRTSSAESIVKMENDSGSLSPDCKNRNSDIDYDEDEEDSENSSSKQQTSRGRDQKHSDDKNTKKRTPRSIKMNESDELIASTVTLSCDICGLIFPRFTPLKKHYRLAHKQNGYATCCGIRLFKRCILVDHINRHKNPEYFKCDECGRVLSTRKNLKRHMLMHSLDQRTRNYHCDKCEMSFYTNNLLSRHMHTHVSGNNIKCTHCDKFFSTEFLVLRHVHGAHNTKFKICDQCGMSFRTVNALRQHQLEHNEIYQNHKDKIEKNLESIKQENVHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -