Cpag013425.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000048.1:5257593-5258273[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-13 6.3e-10 38.8 0.0 2 37 11 45 10 52 0.89
Sequence Information
- Coding Sequence
- atGTCGAAGCGGCCGATTCACAAATACTGCGAAGAGAATCTTGCTAAAGCAATGGTGGCAATTAGGAATGGTATGAAGATACGAAAAGCTAGTCGGGAATATGGTGTGCCGAGGGGCACCCTTCAAGATAGACTGCATTCAAGAATATCTGAAGGTCCGCGGAAGATGGGACCAGCTGCCGTCCTGTCGAAGGAAGAGGAAACAGCAATTGCCAACTGGTGCATCAACCTCAGCAAATGCGGATTCCCCTTGAAGCCAGATGACCTTTTAAATACTGTTCAAAACATTATTTTGGAAGAAAAAAGACCTAATACTTTTAAGAACGATAGACCAGGTAATAAATGgtacaaatcatttttaaaaagaaaccccGGCCTGTGTCACAGAGCTCCTGAGGACATATCAAAAGGACGAGCCGTAATAACAATGGAAAGCATAAAAAGATGGTTCGATAATCTAAAGAACTACTTAGACTCTATAGATGCTGGTGATATACTTCAAGATCCACATCGAATATTTAATGGAGATGAGACTAGTTTTAGTCTTTGTCCAAAAAGTGGGAAGGTTATAGCACCTCGAGGGAATAAGAACGTATATAAGATCgcacaaggaaaagaaaaagaggcTATAACAGTCCTTCTCTTCTTTTCCGCAAGTGGAAAAACTTTGCCCCGTGTGTAG
- Protein Sequence
- MSKRPIHKYCEENLAKAMVAIRNGMKIRKASREYGVPRGTLQDRLHSRISEGPRKMGPAAVLSKEEETAIANWCINLSKCGFPLKPDDLLNTVQNIILEEKRPNTFKNDRPGNKWYKSFLKRNPGLCHRAPEDISKGRAVITMESIKRWFDNLKNYLDSIDAGDILQDPHRIFNGDETSFSLCPKSGKVIAPRGNKNVYKIAQGKEKEAITVLLFFSASGKTLPRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253719;
- 90% Identity
- iTF_01253689;
- 80% Identity
- -