Cgro018219.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720148.1:7098019-7119855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3 3e+02 2.6 1.3 3 21 622 640 621 644 0.92 2 12 0.018 1.8 9.6 0.2 2 19 666 683 665 686 0.92 3 12 0.16 16 6.6 0.6 1 23 703 727 703 727 0.93 4 12 0.52 51 5.0 0.5 1 23 732 756 732 756 0.90 5 12 9.2 9.1e+02 1.0 0.6 2 23 783 804 782 804 0.90 6 12 7.1e-06 0.0007 20.3 1.4 2 23 826 848 825 848 0.97 7 12 0.12 12 7.0 0.6 1 16 853 868 853 875 0.85 8 12 0.42 42 5.3 0.2 1 23 895 917 895 917 0.93 9 12 0.00029 0.029 15.2 1.6 2 23 931 951 930 951 0.97 10 12 3e-05 0.003 18.3 2.1 1 23 957 980 957 980 0.96 11 12 1.6e-06 0.00016 22.3 1.7 1 23 996 1018 996 1018 0.98 12 12 1.4 1.3e+02 3.7 0.2 1 23 1025 1049 1025 1049 0.93
Sequence Information
- Coding Sequence
- ATGCTCGACGAGGACCTCGATGATACACACTTGTGCATCAAGTGTAGCGCCACAATTGTCGGCCTTGATAATTACATTCAGCACCGCAAAACGAATTGTGGCAGCAAGGCGACGGCGGCCGGCTATGGGGAGTTTGAGTATCCGGATGCGGCGAACTACACCAAGACTGAGGTGGAGGCCAGTGCAGGGAAGGCTTCCAAGAGCCTGAACGACCCGTATGACTTGCCCTACGAACTGGGTGCAGATGTGTTCTTCTCCTCGCTGCAGTTGCAAAGCGTGCAGGCAAGCTCTGGCGGCAAGGCCAGTAGTGCCCAGCAGATACTGACAAGGAAGGCGACAGCGACGTTGCTCTCTTCGGGGCGGGATGAGGCCGGCGGTGGGGACTGGCAGGAGGAGGCACCCACCAACAACACAGACAACCTGATGAAGGTTGTGCGGGATATTGGTGAGACGAAGAAGTTTGAGCCCGTATTCAAGCCGATTGCATTCGCGCATGGGTCTCCCGAACCGGACCAGAGTGACGACgaggacgatgatgatgaggacttcgaagatgatgatgacgacgacgaggacTACGTACCGACGCCGTACAGTGGGGGGAAGTGGAAGCCCGGCAGTCAACCTGCAGCTAGGAGCGGCGGCAAGTGGAAAAGTCGAGCGCAGGCAGTGGCTCCCATTCCAGCGAAACATACGGGCGGGAAGTGGAATTTCAAGACTTCTAAGTGCAAAAATGTAGACAAGCGACCGCCGGAGACCTCATCCGACAGGCTGCTGTCGGAGATACGGGCGAAACTGAAGTCCACCTGTGGCTACATCCCAAAAGAAGCTGTCGAAGGATTTGCGATGCCAGACACCGTCCCCGAAGCTGGTGgtaaatggaaaccggggtttCCCAAATTTCCGCTAAGTGTCAAGTGGAAGTCGGCCGATGGTCAGGAGTCACCGGAAGTTCTGGAGGCCCAAACAGGTGGCAAATGGAAGCCTGGCCATGGGCCAGTAGCTGCTGATAAATGGAAGCCCGGTGGGTCGAAAACGCTGAAGCTGTTGCTTCCTCCAGTAACTGGTGGAAAGTGCAAGCCGCACGAGGGAAACCAATCGCCAGAGATCCTGGAAACACAGACCGGTGGAAAGTGGAAGCCCGGACAAGGGCCGGTAACGGGCGGCAAGTGGAAACCAGAAGATCGACCAGCAGATTTGAAGACCTCACAGGAACCAGAGCCAGAGCCACCGGCTTGGGACGATCAAGAGCCGTGGGAAGAGGATGCCGGCGAGGGCCACCCCCCACTGGAGCACACCAAAGGCAAGTGGGTGCCAGGAGCAAAGGTCGAGCGGCTCGAGTACAAGGAAGAGGCCCTTCCACCACCGCAGGACTTCTGGTGCAACATCTGCTGCCGCAAGCTGAAAACCAAGACCATCTACGAGAAACATCTCAAGTCGGGCGTTCACTCGCGAAAGTCCGAAACCGAACAGCAATTGGAACGTGCTGCCGTCGAGCAGCTAGAACTGTCCCAGCAAATCCTCCGACCGCCGGCCTTACTCCTGAAGCGATCCGCCTCTCCCGAGCCGGACCCTGGAAAGCGTAAAAGACGCAAAACCTTCATAAAATGCGAAATCTGCAGACACCGCATGCAGCGCTTCCTAGTGGGCAAACATCTCATCTCTCACTACCACTACGTGCGCATGAGCCTCAACCCGAATCTCTCCTTTGGCATGATCCTCGACAACATCCATGCGATAGTGCGGCAGGCGCCGTTCCAATGCAGTCCGTGTCGGTTCTACGCCAACACCGAGGAGAACTTTCTCAACCACTGGAACTCGCCCGACCACCGGGATAGGACTGAAGGCCCAGGCAAATTCTGGTGCAGCTTTTGTCGATTCGAGTGCGAGGACAACAATCAGATGAGGCGTCACCTGCTCGGCGCCGATCACCGCGAAGTCATTCTGGCCATCAATCGGTCGGTGCCGATCTACATCAGCAAGAAGGTGGCCATAGAGTGTCCGAAGTGTCGTCAGGGCTTCCGCTTCAACATGGAACTGCGGCAGCACTCTCTGCGGTGTGACAGTTCCAAGGGTGGCACTGCCTCGGACGAGTACCAGTCGCGGTATCGCTGCAAACTCTGTCCCGATGAAGTTCTGAAGTCAAAAGTCGCCCTTCAGAGGCACGAAAAGTTCAAGCACAACCAGAGACGGTACTACTGCTCCCTGTGCGAGTTGGACTTTGAAAACGCTGTTAAGGCTGTCAAGCACCGCAAGTCGAAGTCGCATAGAATCAAGTCCGCTGAGAGCCGCCCCAAGAGGGAGGCGGCGCACCCCAAGCCCAGGGATGAAATCGGCGACGATTTGCGGTGTGAAAAGTGCAATCATTTATCCTCGTCGGACGTTGAGGCAATGCTGCATCAAATCACCCACCCCGACGGGTGCACCAAGAAGACCGCCGAACCGCCAATAGAAGACACACTCAACGGCTGCCAAAAGTGTACCCACTGCGTCAAGGCGTTCAACACCAAAGCCGATCTAAAGGCGCACCTAAACACGGCCCACCCCGAGATAAAGCACGTGTGCCCACTATGCGGAGAGGCTTTCACCCTGCCCCGCGAGCTCGGCTGTCACAAAAGGTACAAAATGTGCGTGCCGCAACCACCCACCGAATCCACTTCAAATCTGGCTGTGAAAAAATCCTATCCATGCTCCGATTGCACTTTTAGCTCCGCCTACGAGTCGGAGCTCATATTCCATCGGATTATCCATATCGAGGGTGTGGAGGCGCTCAAATTGAATGCAAAGCTGAAATGTCCACTCTGCGAGAGATCCTTTTCCAAGTACTCACTCCGGTATCACTTGCGCCAGCACACCAACGAGAAGATGTTCGTGTGCGAAATCTGCAATGGGTCATTCTCCCGCCGGCACAATTACAAGGATCACATGCAGTACGTACACGGCGTTGGGGGCGAGAAACAGCGAAAGCCTCGCCGGAGCGAACGTTTCGTGTGCGATACATGCGGCAAGTCTTTTACCGCCAAacaCACTTTGCAAATGCACATGAACGTTCACATGGGACGTGATAAGAAGTTCATGTGCACCATGGAGGGCTGTCAATATATTGGTCGGAATGAAAGGACTTTGAAAATGCACACAGCCGCGCATGCCCTGAAGATGGACTTTGAATGCCCGGAGAAGGGCTGCACCTACAGAGGGAAGACCGAGCACTATCTGAAGAGGTGA
- Protein Sequence
- MLDEDLDDTHLCIKCSATIVGLDNYIQHRKTNCGSKATAAGYGEFEYPDAANYTKTEVEASAGKASKSLNDPYDLPYELGADVFFSSLQLQSVQASSGGKASSAQQILTRKATATLLSSGRDEAGGGDWQEEAPTNNTDNLMKVVRDIGETKKFEPVFKPIAFAHGSPEPDQSDDEDDDDEDFEDDDDDDEDYVPTPYSGGKWKPGSQPAARSGGKWKSRAQAVAPIPAKHTGGKWNFKTSKCKNVDKRPPETSSDRLLSEIRAKLKSTCGYIPKEAVEGFAMPDTVPEAGGKWKPGFPKFPLSVKWKSADGQESPEVLEAQTGGKWKPGHGPVAADKWKPGGSKTLKLLLPPVTGGKCKPHEGNQSPEILETQTGGKWKPGQGPVTGGKWKPEDRPADLKTSQEPEPEPPAWDDQEPWEEDAGEGHPPLEHTKGKWVPGAKVERLEYKEEALPPPQDFWCNICCRKLKTKTIYEKHLKSGVHSRKSETEQQLERAAVEQLELSQQILRPPALLLKRSASPEPDPGKRKRRKTFIKCEICRHRMQRFLVGKHLISHYHYVRMSLNPNLSFGMILDNIHAIVRQAPFQCSPCRFYANTEENFLNHWNSPDHRDRTEGPGKFWCSFCRFECEDNNQMRRHLLGADHREVILAINRSVPIYISKKVAIECPKCRQGFRFNMELRQHSLRCDSSKGGTASDEYQSRYRCKLCPDEVLKSKVALQRHEKFKHNQRRYYCSLCELDFENAVKAVKHRKSKSHRIKSAESRPKREAAHPKPRDEIGDDLRCEKCNHLSSSDVEAMLHQITHPDGCTKKTAEPPIEDTLNGCQKCTHCVKAFNTKADLKAHLNTAHPEIKHVCPLCGEAFTLPRELGCHKRYKMCVPQPPTESTSNLAVKKSYPCSDCTFSSAYESELIFHRIIHIEGVEALKLNAKLKCPLCERSFSKYSLRYHLRQHTNEKMFVCEICNGSFSRRHNYKDHMQYVHGVGGEKQRKPRRSERFVCDTCGKSFTAKHTLQMHMNVHMGRDKKFMCTMEGCQYIGRNERTLKMHTAAHALKMDFECPEKGCTYRGKTEHYLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312116;
- 90% Identity
- iTF_00314781;
- 80% Identity
- -