Cgro010613.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720145.1:62461520-62475231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6 2.6e+02 2.8 4.3 2 23 183 204 182 204 0.95 2 12 0.00023 0.023 15.5 0.6 1 23 249 271 249 271 0.99 3 12 0.00022 0.022 15.6 0.6 2 23 455 476 454 476 0.95 4 12 0.24 24 6.0 0.6 3 23 483 503 482 503 0.95 5 12 1.1 1.1e+02 4.0 5.1 2 23 520 541 520 541 0.98 6 12 9.1 8.9e+02 1.1 0.1 9 23 545 559 543 559 0.89 7 12 0.13 12 6.9 3.9 1 23 564 587 564 587 0.96 8 12 8.5e-06 0.00084 20.0 2.4 1 23 594 616 594 616 0.98 9 12 4.6e-06 0.00046 20.9 4.6 1 23 622 644 622 644 0.98 10 12 3.7e-07 3.6e-05 24.3 2.1 1 23 650 673 650 673 0.98 11 12 0.00084 0.083 13.8 1.5 1 23 678 700 678 700 0.97 12 12 4.1 4.1e+02 2.1 0.1 1 23 705 728 705 728 0.86
Sequence Information
- Coding Sequence
- ATGCAGGATCCACCAGAAATTGAAGATGTTATCACTAAAATGCGAAGTAACTTGCCCGTTTGTAGGGTTTGCTTGGATATAACCATGGAATACATTGAATTCAAGAGCACTCTGTGTGTAGTAGATGGCCTTAAAATCTCCTATTATGAGGGCTTTCAGCTATTCACTCCAAATCTGATAGATTTCCATGGAAAAATACCAGATACATTTTGCACATCGTGTGGAAGTGATCTATTGAAAGCCTACCTATTTCGTAAACGGATCGAAAATTCTAATATAATTCTAAACGAGATAAATAATATTATGATAAGGAACATAGATGAACTTGATTCAGTGTATCTGGATGACCATATTAGTCATCATGTTGAGGTGGATCAAACAGAGGATACAAATGAGCTTATTTCAGACTCTGAACAAACATTTCCTGCCTCTCCTAAGAACTCGCTATATAGTAACTCTGATTCCGAGTCTTCCGAAGAGATCGCTTTAGACGAGATGGAGTCGACAAAAGAGAAGACCGGAAAGTTAATAGAGTCATCAATATGGATGTGTCATGAATGTGAAGTAACATGTCTGTCAGAGAAGATGTTGACTAAACACAAAAAGTATCATAAGCTAGCTGAAAAGGGTGAAACTAAATGCAAGCAATGCAATAGGATAATTTGTTCAATTGAAGAACATGACAGCCACATGTACCTTCACAAGTTCTCCGAACTAATATCAGTTCGTTCGGGCAAGTTGGCCTACCGATGCAGGTTATGTGAGCGAAAATATCGCTCTGAAGGTGATTTTATCGACCACATGAATATACACAAAGGGACTTTGTGCGTGGTCGATGGAGAAGACATTACATATTCTGATGGATTCAATGAAATATGTTCGCCTTCTATTGAATTACCTGATGACTTGCCAAGCAGTTTCTGTGTAAAATGTGGAAATGACCTGCTTAATGCATACCTATTCCTTAAACGAGTGGAAAACGCTAACTTTATACTGCATCGGCTGAAACGCTTCAACGAAGAAAGTACAAAACTGGAAGATGCTTATTCTGCGGTACTTGTTCAAAGTGAATCTGATTCTTTTGAAGACGATTTCAAAGATGAACTCCTTTCAGAAGATCCCGACGACGAGTCTGATGAGGATTGCAAGAGATCGCCCATTCCGGATGAAACTTCAATAAAATCGGAAACTCAAAAGCACTTTGAAATCGAAACTGAATGTCTGGTCGGCGATGAATTTAACCTAGCAGATACTTCCACAAAAGAGGACGTGACGGTTTCTTCACTGGTAGTTGATACCGATATTGAATCAGACGATGAAAATGCGGCTGAAAGTAACACTAACTATGAGGAATTGGCATGGATTTGTGACGAATGTGGGCAAGCTTGCGATACAAAATATTCTCTAACCGAACACTATAAGGAACACCAGCCAAACGATAGAGCTTGCTTACAATGCAATAGGTTGTTTCAAAAAAGTGAAGACCTGGACAACCATCTGCTGTTTCATGAGTATACTGAAACGATAATGGACAACTCAGATAAGAAAGTAGTTCGTCGATGCACATTGTGTGAAACGCATTGTCATACGGAAGCTGAATTTGTTGACCATATAAACACCCACAGAGGCAATAAATTTACCACAAAACTTGGACTGAAGGCGCACTCCGTCACTCATAAACCGCGCAAGTTCGTCTGCCATCTATGCGATAAGATCTGTTTAACAGATTTTACGTTAAGAAAACACATCCAATACATCCACCTAACGGACCGCTTAAAGCACCAATGTGAAGACTGTGGGTTGTTCTTCCAATATCCGTCTTATCTGCGGGACCATCAGAGAAAGCATAATGCAAAGAGTCGATTTCAATGTCCGCACTGCGATAGGTCTTACTGTCGCAAACCGCAACTAGACATTCATATGCGTTATCACACTAATGACTTTCGATATAAGTGCGATCAATGCGATAAGTGTTACGTTACCAAAAGTAATTTAATGGACCACGTCAGATCGGCACATTTTAAGGTCACATACGATTGCAATGAATGCGAACTGAAGTTCAAGTCGGTGACGGGCTTAAGAAAACATAAGTATACACACACGGGTTATCCCTACAGCTGTCCGTTGTGTCTAATTGGGCAAACATCGCGATCTGGAATGAAAGCACATTTGTTTGGTGTTCACAAGGACTCTGTCACCGAGGAGGACTTTAATGAGATGTTTCCTATAATAATTCCAAAGACTGGCTATCGAAGGCCGAGAGTTGTTTGA
- Protein Sequence
- MQDPPEIEDVITKMRSNLPVCRVCLDITMEYIEFKSTLCVVDGLKISYYEGFQLFTPNLIDFHGKIPDTFCTSCGSDLLKAYLFRKRIENSNIILNEINNIMIRNIDELDSVYLDDHISHHVEVDQTEDTNELISDSEQTFPASPKNSLYSNSDSESSEEIALDEMESTKEKTGKLIESSIWMCHECEVTCLSEKMLTKHKKYHKLAEKGETKCKQCNRIICSIEEHDSHMYLHKFSELISVRSGKLAYRCRLCERKYRSEGDFIDHMNIHKGTLCVVDGEDITYSDGFNEICSPSIELPDDLPSSFCVKCGNDLLNAYLFLKRVENANFILHRLKRFNEESTKLEDAYSAVLVQSESDSFEDDFKDELLSEDPDDESDEDCKRSPIPDETSIKSETQKHFEIETECLVGDEFNLADTSTKEDVTVSSLVVDTDIESDDENAAESNTNYEELAWICDECGQACDTKYSLTEHYKEHQPNDRACLQCNRLFQKSEDLDNHLLFHEYTETIMDNSDKKVVRRCTLCETHCHTEAEFVDHINTHRGNKFTTKLGLKAHSVTHKPRKFVCHLCDKICLTDFTLRKHIQYIHLTDRLKHQCEDCGLFFQYPSYLRDHQRKHNAKSRFQCPHCDRSYCRKPQLDIHMRYHTNDFRYKCDQCDKCYVTKSNLMDHVRSAHFKVTYDCNECELKFKSVTGLRKHKYTHTGYPYSCPLCLIGQTSRSGMKAHLFGVHKDSVTEEDFNEMFPIIIPKTGYRRPRVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -