Basic Information

Insect: Cheilosia grossa
Gene Symbol: -
Assembly: GCA_963082955.1
Location: OY720148.1:55195750-55197713[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.8 9.7e+02 1.0 0.7 9 23 189 204 179 204 0.78

2 12 0.0055 0.54 11.2 2.8 3 23 212 232 210 232 0.97

3 12 0.057 5.6 8.0 0.6 2 13 267 278 267 282 0.84

4 12 2.8e-05 0.0027 18.4 2.6 2 23 297 318 296 318 0.98

5 12 8e-06 0.00079 20.1 3.3 1 23 324 346 324 346 0.96

6 12 0.00015 0.015 16.1 0.7 2 23 352 373 351 373 0.97

7 12 0.0044 0.44 11.5 5.0 2 23 382 404 381 404 0.94

8 12 9.2e-05 0.0091 16.8 1.1 1 23 429 451 429 451 0.99

9 12 0.00022 0.022 15.6 6.3 1 23 457 480 457 480 0.94

10 12 1e-06 9.8e-05 23.0 3.5 1 23 486 509 486 509 0.97

11 12 0.00015 0.015 16.1 0.2 1 23 515 537 515 537 0.98

12 12 0.042 4.1 8.4 0.1 1 16 543 558 543 559 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.8	9.7e+02	1.0	0.7	9	23	189	204	179	204	0.78
2	12	0.0055	0.54	11.2	2.8	3	23	212	232	210	232	0.97
3	12	0.057	5.6	8.0	0.6	2	13	267	278	267	282	0.84
4	12	2.8e-05	0.0027	18.4	2.6	2	23	297	318	296	318	0.98
5	12	8e-06	0.00079	20.1	3.3	1	23	324	346	324	346	0.96
6	12	0.00015	0.015	16.1	0.7	2	23	352	373	351	373	0.97
7	12	0.0044	0.44	11.5	5.0	2	23	382	404	381	404	0.94
8	12	9.2e-05	0.0091	16.8	1.1	1	23	429	451	429	451	0.99
9	12	0.00022	0.022	15.6	6.3	1	23	457	480	457	480	0.94
10	12	1e-06	9.8e-05	23.0	3.5	1	23	486	509	486	509	0.97
11	12	0.00015	0.015	16.1	0.2	1	23	515	537	515	537	0.98
12	12	0.042	4.1	8.4	0.1	1	16	543	558	543	559	0.85

Sequence Information

Coding Sequence: ATGAGTGTCGTGGAAAACACTTGCAGGACGTGTGGAAAACCATCTGCGCAGGAAGATTGTTCCGATCTCCATCCAATGTACAGTTCAAAAGAGTACCACAATGAGTTGAAAATGATTCAAGAAGAGTTTGAGATATGGAATCTAAATATTGCAGAGAGTGATGGCCTACCTCAGAAAATTTGCCTTACATGTTTCGATAGCTTCTGTCAGATCCACAATTTTCGCTTAATCTGCCAAGAGGCGCAGATGAACTTCGGCGAGCTATGCACTGGCTTggacataataataaaactcgAGTCCGAAAATGAGGAAGGTTACATTGACTATCCAGAAGATTTCGAGGGCGAGCAGTCAATCACAGTTCAAGAGCACTATCGGTTCCCCGGCGATGGTCTGTTATTAGATCCAGTTCAGAAAGAGACACCACTTGACGAACATTTGGACACTGTGGAATTGGACGGAACGTGTCGAATAGAAACAGAGTCCGAATATGACACTGAAGAACAGGACGCTGTGCCTCTCGATCTCAAAAAACACCAATGTGAATTCTGTATGGACTTTGTAGGGTTCGATGATCCAGAACTCTTAAACGAACATTACAATCTTAAGCACTCTACTGATCTACCCTACGGGTGTCCGAAGTGTGAAAAGTGTTTCGACACCAAAAGGAAACAGTATAGCCACGCCAGAGTTCATTTTCGGAAGGTAGTCGAGTGCACAGTTTGCAGTAAAAAGGTTCGTGGTGGTAAACGAATGATGGCTGCACACACTGAACTGCATCATGTTGAGAAAGATCGCGAATGCACAACGTGCGGCAAAAAGTTCAAAAACATCTCGCTAAAAAGATTCAATTACCATTTGGGTTGGCACGATGATGCCAAGCTGCAGAAGTGCAAATACTGCGACAAGAAGTTCATCCAGATCAACCATTTGGTAATCCACGAAAGGACCCACACAGGAGAGCATCCATTTCTATGCAGTGAGTGCGGAAAGGGATTTAAACACTCCAATCTACTGTACACACACATGAAAAAGCACGGAAAGGGCAATATATCATGTACTCAATGCGACCAAACTTTCTTTAGCCTCAGTGGCTACAAGCTTCACATGTTAATGCATAACCGTAATGGCGGAAATGCAACTCGCTGCGAGATATGCGACAGGACCTACAGCACGATGCATAGTTTGCGCCTGCACAATCACACAAAGCATGGAGAGCCCCCTACTCCGGCAGTGCaaaatatgttgcaaaaagctgcaaagaaaaaagtataCATCAAACCATACAAATGCGCAAAGTGTCCGGAATCGTTTGTGTTACACCAACAGCTTGTAAAGCATCTGAAAATACATGACGAAATCAGACCGTACAACTGTGACCGATGTCATAAAACATTCAAACGCAAGGTTCATTTGAACTTACACGTCAATTTCACACACTTGAATAAGAAGCCACACAAATGTCCGGTCTGCGAAAAGACATTCACGCAGAGTAATCATCTTAGAGAACATATTGCCACGAAGCATGAGGATAAGAGAGATTTCAAATGTACCATGTGTAGTGCCGCTTTTGCGGTTGCCAAGGGTCTTAAGAGTCATATGATCAAGCACAGGGAGACGAAACCATTTACGTGCACAGTATGTAACAGGAGCTTCATCGCTTTATCCCTTCTAAAAGGCAAGTCGAGACAGTCAAACATTCGAATTTcttaa
Protein Sequence: MSVVENTCRTCGKPSAQEDCSDLHPMYSSKEYHNELKMIQEEFEIWNLNIAESDGLPQKICLTCFDSFCQIHNFRLICQEAQMNFGELCTGLDIIIKLESENEEGYIDYPEDFEGEQSITVQEHYRFPGDGLLLDPVQKETPLDEHLDTVELDGTCRIETESEYDTEEQDAVPLDLKKHQCEFCMDFVGFDDPELLNEHYNLKHSTDLPYGCPKCEKCFDTKRKQYSHARVHFRKVVECTVCSKKVRGGKRMMAAHTELHHVEKDRECTTCGKKFKNISLKRFNYHLGWHDDAKLQKCKYCDKKFIQINHLVIHERTHTGEHPFLCSECGKGFKHSNLLYTHMKKHGKGNISCTQCDQTFFSLSGYKLHMLMHNRNGGNATRCEICDRTYSTMHSLRLHNHTKHGEPPTPAVQNMLQKAAKKKVYIKPYKCAKCPESFVLHQQLVKHLKIHDEIRPYNCDRCHKTFKRKVHLNLHVNFTHLNKKPHKCPVCEKTFTQSNHLREHIATKHEDKRDFKCTMCSAAFAVAKGLKSHMIKHRETKPFTCTVCNRSFIALSLLKGKSRQSNIRIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00316276; iTF_00315452; iTF_00314615;
90% Identity: iTF_00315452;
80% Identity: -