Cgro010625.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720145.1:62525831-62527541[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.017 16.0 1.7 2 19 148 165 147 165 0.97 2 12 1.9e-05 0.0019 18.9 1.5 2 23 183 204 182 204 0.96 3 12 0.00051 0.05 14.4 1.4 1 23 219 241 219 241 0.98 4 12 0.34 34 5.5 8.4 1 23 247 270 247 270 0.92 5 12 4.8 4.8e+02 1.9 0.2 2 8 298 304 297 309 0.88 6 12 0.0037 0.37 11.7 3.0 1 23 325 347 325 347 0.95 7 12 0.00045 0.045 14.6 0.9 1 23 354 376 354 376 0.98 8 12 0.00036 0.035 14.9 0.1 1 23 383 405 383 405 0.98 9 12 7.2e-08 7.1e-06 26.6 1.9 1 23 411 433 411 433 0.99 10 12 5.4e-06 0.00053 20.7 0.7 1 23 439 462 439 462 0.98 11 12 0.021 2.1 9.4 1.0 1 23 467 489 467 489 0.95 12 12 0.63 62 4.7 0.1 1 9 494 502 494 507 0.86
Sequence Information
- Coding Sequence
- ATGGAGTACATAGATTTTGAAATGTCGCTTACCCTGAGTGGCGACGGCGAAGTTACCTATTTTGATGGCTACAAAGAATTCACACATTCTTCAATTATATTCGAACGACACATGCCTTCCGTGCTGTGCACTGCCTGCGCTGAAGATCTTCATAATGCGTATCTGTTCTCAAAACGTGTGAAAAATGCTGAGACTATTTTAAAGCGGATAAAAGACCAAATCTGTATAGAAAGTCTGGCCATTAATACTGTCGAAAGTTTGGAGAAACCTGCCGAAATCAAGGAAGAACAAGTTTTTGCGACGGGAGGAGCTATTCAGGCTGAACCTAATTCGGCTAACATAATCAAATCGCAACAGACTTCTGCTGCAGttgttgaaaatgaaaatgtttcggAAAGTGAAGCGGCACTTGATAACTCAATAGATCCAGACACTTGCTTGCAATGTCCGGATTGTGGAAAGATTTGCTCATCGCGAGATTCCTTTAAAAAGCATTGTCTACCACACCAGCTTgcaagaagcaaaacaaaaactagaaaacccataaaatgcaaacaatgcaacaaaacatttaagttcTATGTAGATTTGGAAAAGCATTTACTCTTACATGGGATGGCAAAAATTCAGGTAGCTAAAGCTGGGAAAATGGTTTACAAGTGCAACACATGCGAAAAGTCTTATTATTCCGTCGTTGCATTCATTGATCACATGCACATCCACAATGGAACAAAACCGTATAAGTGCAGCATATGCGGTGTATGTCGTCACACCCGGTCGAAGCTCAAATCCCACAAATACCACACTCATGGGAAAGGTTTAGAACTCCGACTTGCATTCAAAGACGAGAAAATGCAATTCATGGAAACGCAACCGTTGCGTTTCAAAAGCAAATGTCGCTACTGTGGGAAGTTGGTTGTTAATGAAATAATCAAGCGACACGAGAAGAGGCATGAGAATCCCGAGAAGCGCTTTCAATGTTCTTTTTGCTcGAAAACATTTTACACagagcaaaatttaaaatttcatgcCGACACTCATCTGGAGGTTCGCAAGCCATTCAAGTGCACAATATGTGGTCAGGAGATCCTGCGACAGTACTCGCTTAAACTACATATGCAACGCCATGCCAGTGAAGATAAAAAGTTCAAATGTGATATTTGCGGTACGGTATTATCGGCCAAAGGATCACTAGCCGAGCATAGGGAGAAACACTTTTCTAACAGCAAATACAAGTGTGAGGACTGCGATAAGACGTTTATCAGAAAATCACGACTGGTGTACCATATGCGTAGTCATACAGGcgaaaatccatttcaatgCAAACAGTGTGACAAGAGCTATAAGATGGCAGCTCGCCTCAAGAGCCACATCAGGGTAGTACATGCAAATAAAACCTATGACTGCGACCAGTGTGATTCAAAATTCAGATCATATGGCGGCTTTGTAAACCATAAGTTTGTGCACATTGGATACCCATTCAAATGCCCGCTGTGCGATAAAGGAGCAGCCGATCGGGAAAGGTAG
- Protein Sequence
- MEYIDFEMSLTLSGDGEVTYFDGYKEFTHSSIIFERHMPSVLCTACAEDLHNAYLFSKRVKNAETILKRIKDQICIESLAINTVESLEKPAEIKEEQVFATGGAIQAEPNSANIIKSQQTSAAVVENENVSESEAALDNSIDPDTCLQCPDCGKICSSRDSFKKHCLPHQLARSKTKTRKPIKCKQCNKTFKFYVDLEKHLLLHGMAKIQVAKAGKMVYKCNTCEKSYYSVVAFIDHMHIHNGTKPYKCSICGVCRHTRSKLKSHKYHTHGKGLELRLAFKDEKMQFMETQPLRFKSKCRYCGKLVVNEIIKRHEKRHENPEKRFQCSFCSKTFYTEQNLKFHADTHLEVRKPFKCTICGQEILRQYSLKLHMQRHASEDKKFKCDICGTVLSAKGSLAEHREKHFSNSKYKCEDCDKTFIRKSRLVYHMRSHTGENPFQCKQCDKSYKMAARLKSHIRVVHANKTYDCDQCDSKFRSYGGFVNHKFVHIGYPFKCPLCDKGAADRER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315418;
- 90% Identity
- iTF_00316262;
- 80% Identity
- -