Cgro015786.2
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720147.1:18837386-18857836[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.6e-05 0.0056 17.5 0.3 2 23 116 137 115 137 0.97 2 10 1.9e-06 0.00019 22.1 1.2 1 23 143 165 143 165 0.99 3 10 3.1e-06 0.00031 21.4 2.6 1 23 171 193 171 193 0.98 4 10 3.4e-06 0.00033 21.3 0.2 1 23 306 328 306 328 0.99 5 10 1.4e-05 0.0014 19.3 1.1 1 23 334 356 334 356 0.97 6 10 2.4e-05 0.0023 18.6 0.2 1 23 363 385 363 385 0.99 7 10 5.2e-07 5.1e-05 23.9 1.4 1 23 391 413 391 413 0.98 8 10 0.00036 0.035 14.9 0.3 1 20 419 438 419 441 0.93 9 10 8.6e-06 0.00085 20.0 1.1 2 23 448 469 447 469 0.97 10 10 3.8e-06 0.00037 21.2 0.9 1 23 475 498 475 498 0.97
Sequence Information
- Coding Sequence
- ATGTTCGAACAGCAAATCAAATCGGAGCCATTGACTTACTATTCTACGTGTCCCCCTCCTCCGCAAGAGGCCCATCAAATCCGAACTCAAAATTCACATCAcgtgcaacagcaacaacagcagggTCAGCAAGCCAATCAACACCAACAGCGATCAGTTATAACAACGATTGACAATAAAAATAACGTGTTGCACTCGCAGATTTTGCTGGCTCAACAATCAACAACGCCCTTATCTGATGTTTCCGATGGACTTAAACCCGAAATCATCCAACCGAATGTCATGTCAATATCATTATCATCTACAAACAGTACAGGATCAGGACAATCTAGAAGTAAGCCTCAAGTATGTAAAGTTTGTGGCAAAATGCTATCTTCAGCAAGCAGCTACTACGTACATATGAAGTTACACTCCGGAACAAAGCCATTTCAGTGCACAGTGTGTGAAGCTGCATTTTGCAGAAAGCCTTACCTTGAAGTGCACATGCGAACTCACACAGGCGAACGACCGTTTCAGTGTGAATTGTGCCTAAAGCGATTCAGCCAGAAATCTTCCCTTAACACTCACAAGCGTATTCATACAGAGTCATACAACAACGCAAGGTGTCTCGTTTTGCACAGTGGACAGCATCCCAATCCATTCGAAGGAGTGAGGCAAGGAGATGTACTGTCACCGATCTTGTTCTTACTTGCGATTGATGATGTAATGACCGCCACGGTGGGTACAAACGAGAGACTTGGGATCCAATGGAATCCGTTTGATAAGCTAAGCCATTTGGACTACGCTGATGATATCTGTTTCCTGGCAAACAACATTGGTCGGGAGGTGGCTGGCCTTAGGACAAAATTTTTGCACACAAACCGAGACCAACAACAGCAGGTTATCCTGAGACAGGAGACCAttcaaGATCGCCCCTTCCAATGCGAACAATGCCCAGCGACATTTGCACGCAAACCTTACCTAGATATCCATATGAGGACGCATACTGGTGAACGTCCATTCGAATGCGATGTGTGCCTAAAACGCTTTACTCAAAAATCATCACTAAatattcacaaaactgttcataatGTAGGCATACGGCCATTTCAGTGTACACTTTGCCCGGCTGCGTTCGTACGGAAGCCTTATCTTGATATTCACCAGAGGACTCACACTGGCGAGAGACCCTTTGAATGTGAAATCTGTTCTAAACGGTTTTCACAACGATCAAcattaaatatacataaacgAATTCATACAGGTGAGAGACCGTATGCATGTGATATTTGCAACAAGACGTTTGCCGTGAAAAGCTATGTAACCGCACACCGGTGGTCGCATGTCTCCGAAAAACCGTTGAGCTGTGATCGTTGTTCGATGACTTTTACTAGTAAATCACAGTTTGCTGTGCATATCCGTACACATTCTGCCGGCCAAAATTTCGAATGCAACGTATGTGGGAGAGCATTTATTCGTGATAGCTATCTTATAAGACATCACAATCGGGTACATCGACAAGAACGTACAACAGCAAACAGCATAGCTACTATTAACAGCGTTGCAACTGGAGAAGATATTGGTAATGCAAGCACTCCGGATCGGGTGGATGTTTTCGAATCGAACAGTCCTCAAGTTTGCGATTTACGGTACGTACCCAATTTAGTTATGAGCAGATCACCGGTCGTTTCAGAACTATCTCCAAACGGTAATAGCCAATCAATGACAATGAATCATCAAGAGAGCAATCGTAGTCAAATAAATCTAAATGAAGTACGTACTATGACCATTAGTGAGCGTCTAATACAAGATGCCCGTGCTATTCATGAGAGAGCAGTTCAAGAACAACAGCGCGCAATACAGGACAGAGCCAACCAGGAACGCATACTGCAAGAAACCGCTTTCCAAGAGCGAACTCTACAAGATCAACAACAAGCAATACAAGAAAGATTACTGCAGGACAGTGAAGAACAAGCACGAGTCATACAGGAAGCAAATGTTCATTCGTCTATAAGCATACAGCAGGGCCATGTTTTAACTCATAGCAATTTGTTAGACAAATCTTCGGTCCTCAGTCCGGGATCTGTTTAA
- Protein Sequence
- MFEQQIKSEPLTYYSTCPPPPQEAHQIRTQNSHHVQQQQQQGQQANQHQQRSVITTIDNKNNVLHSQILLAQQSTTPLSDVSDGLKPEIIQPNVMSISLSSTNSTGSGQSRSKPQVCKVCGKMLSSASSYYVHMKLHSGTKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCELCLKRFSQKSSLNTHKRIHTESYNNARCLVLHSGQHPNPFEGVRQGDVLSPILFLLAIDDVMTATVGTNERLGIQWNPFDKLSHLDYADDICFLANNIGREVAGLRTKFLHTNRDQQQQVILRQETIQDRPFQCEQCPATFARKPYLDIHMRTHTGERPFECDVCLKRFTQKSSLNIHKTVHNVGIRPFQCTLCPAAFVRKPYLDIHQRTHTGERPFECEICSKRFSQRSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAVHIRTHSAGQNFECNVCGRAFIRDSYLIRHHNRVHRQERTTANSIATINSVATGEDIGNASTPDRVDVFESNSPQVCDLRYVPNLVMSRSPVVSELSPNGNSQSMTMNHQESNRSQINLNEVRTMTISERLIQDARAIHERAVQEQQRAIQDRANQERILQETAFQERTLQDQQQAIQERLLQDSEEQARVIQEANVHSSISIQQGHVLTHSNLLDKSSVLSPGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312853;
- 90% Identity
- -
- 80% Identity
- -