Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 4.2e-07 0.00022 21.2 0.0 2 38 15 51 14 67 0.89

2 2 5.2 2.7e+03 -1.5 0.1 30 45 137 152 137 152 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	4.2e-07	0.00022	21.2	0.0	2	38	15	51	14	67	0.89
2	2	5.2	2.7e+03	-1.5	0.1	30	45	137	152	137	152	0.86

Coding Sequence: ATGGTGCGTAactacaagaagaaaaaaactacaGAAATTAACGAAGATGACGTAAAGAGTGCTATCGCGgcagttataaataaaacaatgacACTTAGAGGTGCTGCCAGTACTTACGGTATTCTGCCGAATACTTTATTTTATAGAATTAAGAACTATAAACAAAACAGAACTCTCCAAGGTCAAGTTTATTCAAGCAATTTTTCTACAAGGCAAGTTTTTACCACCGCTGAAGAAGATATGCTGGAGAAATATTTACTTCGAAGCTCAAGAATGAATTATGGATTAACATACGTTCAAGCTCGAACATTAGCATTTCAATATGCCACCCTTCTAAAAAAATGTCCCGATATTTGGACTGATAACAGACAAGCTGGGAGCGATTGGATGAAAAGCTTCATGAAGAGACACAACACCCTTTCTTTAAGGAAGCCTGGAAACACGAGCTTATCACGATCAACAAGCTTCAACAAGCACAATATCGAAGAATTTCAAACCAATTACCAAAGAGCACTTGGTAAGTTTAATTTCACCCCCGATCGAATATTGAACTTAGATGAAACAGATTTCAACTTTGCTGATGACTCATCCATTGAACAACTTGATGCAGAGCACGAAGACGAATCATGTAAAGATTTAACTTACGACCATTTAAATCCAGGCGATTATGTATTGGTGGAATGTTCCAATAAGAATAATAGTAAGATGTTAGGTTTTGTTGGCCGAATAATTGAGGAAGATGGCAACATGTACAACGTCAGCTTCTTTAAGAAGAAAGCCGGTTCCTATAGGTTTGTCTATCCTGACATAGAAGACAAGTGGTCTGTTAGTGTCATACAAATAAAAGCTAAGCTACCACCACCTATTCATCCCTCAGGAACATCGAGGACAGCTGCGATGATGACTTTTGCTTTCGACTTCTCGAAATTTCAATTAGGTTAA
Protein Sequence: MVRNYKKKKTTEINEDDVKSAIAAVINKTMTLRGAASTYGILPNTLFYRIKNYKQNRTLQGQVYSSNFSTRQVFTTAEEDMLEKYLLRSSRMNYGLTYVQARTLAFQYATLLKKCPDIWTDNRQAGSDWMKSFMKRHNTLSLRKPGNTSLSRSTSFNKHNIEEFQTNYQRALGKFNFTPDRILNLDETDFNFADDSSIEQLDAEHEDESCKDLTYDHLNPGDYVLVECSNKNNSKMLGFVGRIIEEDGNMYNVSFFKKKAGSYRFVYPDIEDKWSVSVIQIKAKLPPPIHPSGTSRTAAMMTFAFDFSKFQLG

Sequence clustering based on sequence similarity using MMseqs2