Cgro001485.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720144.1:25703837-25704687[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-08 3.9e-05 23.6 0.0 3 36 16 49 14 55 0.93 2 2 4 2.1e+03 -1.1 0.0 5 12 153 160 152 162 0.85
Sequence Information
- Coding Sequence
- ATGCCAAGAAGTAAGTCTGGAAAAAAAAGACCAAATGTGGACATTGATGCTTTACGGCGTGCTGTGGAAGAAGTAGTGGACAATGGCAAATCTATGTACACCGCAGCAAGGATGTTTAACATCTCCAAAACCACGTTAATGCGTCACACCACCAAGCAAAAGGGATCGAATAACTCTTCTTTTGTTAACGAGAGTCGAATCAACCACCGCCAGATATTTTCGCCTGAAGAAGAAGATCTCCTAGCAGAAGCTACTAGTTTTAACGAGGCCAACGTGAAAACTTTCTTTCAAAATTACAAAGATTGTTTATCACGATATCACTTTTCACCTGAGCTAATATTCAACACTGATGAAACAgGTAATTCTACGGTTCATGTTCCGCCAAAAATTCTGGCTGAAAAAGGTGCTAAACAAATAGGAAGTGTAACATCAGGAGAACGAGGGTTAAATTTTACCATGATAGCTGCAGTGAATGCGATCGGAAACCATGTGCCTCCAATGCTTATCTTTCCACGCGTAAATTTTAAAGAGCATAAGCTTAATGGAGCTCCTGCAGGAACGATTGGAGATGCTAATCCAAGTGGATGGTCTActtaa
- Protein Sequence
- MPRSKSGKKRPNVDIDALRRAVEEVVDNGKSMYTAARMFNISKTTLMRHTTKQKGSNNSSFVNESRINHRQIFSPEEEDLLAEATSFNEANVKTFFQNYKDCLSRYHFSPELIFNTDETGNSTVHVPPKILAEKGAKQIGSVTSGERGLNFTMIAAVNAIGNHVPPMLIFPRVNFKEHKLNGAPAGTIGDANPSGWST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -