Cnem012682.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- nfxl1
- Assembly
- GCA_949716465.1
- Location
- OX454334.1:23629849-23633867[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 2e+04 -8.1 6.4 15 19 170 174 169 174 0.82 2 21 0.15 1.5e+03 -0.5 0.8 4 10 205 211 204 211 0.95 3 21 2.4e-08 0.00024 21.2 14.8 1 18 219 235 219 236 0.98 4 21 1.1 1.1e+04 -3.3 1.1 5 10 261 266 261 266 0.93 5 21 8.6e-08 0.00085 19.4 15.2 1 19 272 291 272 291 0.97 6 21 1.4 1.4e+04 -3.6 1.8 6 10 316 320 315 320 0.89 7 21 2.3e-09 2.3e-05 24.4 15.0 1 19 326 344 326 344 0.99 8 21 1.1 1.1e+04 -3.3 1.2 5 10 368 373 368 373 0.93 9 21 3.7e-08 0.00037 20.6 8.4 1 18 379 396 379 397 0.96 10 21 0.31 3.1e+03 -1.5 0.4 1 5 406 410 406 415 0.75 11 21 8.6e-07 0.0085 16.2 14.7 1 18 431 448 431 449 0.98 12 21 2.7e-08 0.00027 21.0 13.2 3 19 460 476 452 476 0.85 13 21 2 2e+04 -4.9 1.3 6 10 504 508 504 508 0.91 14 21 0.00059 5.8 7.2 12.4 9 18 521 530 511 531 0.90 15 21 0.26 2.6e+03 -1.3 4.2 4 11 545 552 534 553 0.86 16 21 0.22 2.2e+03 -1.0 0.5 6 10 612 616 611 618 0.90 17 21 0.0041 40 4.5 6.9 1 12 622 633 616 633 0.82 18 21 1.5 1.5e+04 -3.7 3.2 6 11 649 654 646 655 0.73 19 21 0.00023 2.2 8.5 13.5 4 18 663 677 661 678 0.94 20 21 0.65 6.4e+03 -2.6 0.8 8 13 683 688 682 689 0.77 21 21 2.7e-06 0.027 14.6 11.5 1 17 730 748 730 750 0.86
Sequence Information
- Coding Sequence
- atgtcagcatcaaatttgtcaaaacaaaagaaatcgcGGAAGAATGCTCCAAGTGCATCCTCAAGACAACGGGAGGAAACGTCCAACAAGAATTTACAATCCAACAACTTCAATGAAATTCAAACTAGAAACATGGAAATAGCTAAGAAAATCACTGAGAACTACGAATCCAGTTCGGATGAAGAGCAACTTGATGGAAGTCAAATCTTAGaaaAATTGTATAAGAACTACGCGGGCGGAAATGTCCAACTCCAAAAGACGGCGGCTTTCCTCGAGAATGTTCTGCAGTCTGGATCGGCCATTTGCCTTATATGCATTGGCTCCGTTAAGAGAGCCGATCCAATTTGGTCCTGCAAATACTGCTATTGCGTCCTTCACCTGCTGTGCGTCAAACGGTGGGCGAACGATAGTATAGCGCTATTAAAAGAGAAAGGAACCGAAGAGCAAGGCTACTACAACAACTTGGGtgaatttattccaaaaaaaattcgagCAGTTAAATGGTGTTGCCCTCAATGTCGTCGAGACTACAAACCCGACGAAAAGCCAACCCAATACGAGTGCTTTTGCGGCAAAGAAATCGATCCACCAAATAAGGATTGGCTGGTGCCTCATTCTTGTGGTGAAACTTGTGAAAAGCCATTGCAACCAGAGTGTGGACACAAATGTTTGCTACTTTGTCATCCGGGTCCATGTCCACCATGTGCTCAGAGTATATTAGTTAGCTGTAAATGCGGCAAATCACCACCAAAAATGGTACgatgttttcaaaaaacttgGACTTGTGATCGGAAATGTCCGAAAATATTGCCCTGTGGCAAGCATCAGTGTGATCAAGTGTGTCATGCACAGGGACAGTGCCCTCCTTGCACTAAGACAAGCCTACAGAAGTGTATCTGCGGCAACGAAGAAGCAGTAAGGAGCTGCTCCCAGCGTGTCTGGCAATGCAAAAAGGTCTGTAACAACCCGCATAGTTGTGGCATTCACCAGTGTAAAAAAGTTTGTCATAAAGGTCCATGTGAGGAGTGCCCTCGGAGCCTAGCAAGAAAGTGTCCATGTGGTAAAACTTCTAAGTTGGCACCCTGTaatgaagaaattgaaacttGTAATAATACTTGCCAGAAGTTACTCTCGTGTGGCAAACATTTTTGCATTCAGAAATGTCATAAAGGTGATTGTAGCTTGTGCTTGATTATTACAAAGAAAACATGTCGCTGTGGGATGCATGAAAAAGAGCTTCCCTGTTGGAAAACATTTCTCTGTGAGACTAAATGCAAAAAAACTCGGGACTGTGGGAAGCATGCTTGCAacaaaaagTGCTGTGATGGTCAGTGTCTACCGTGTGACAAAATCTGTGGCAAACTACTAACGTGCAAGAAGCATAAATGCAATTCTGTATGTCACGATGGCCCCTGCTATCCATGTAAGCTAAAATCTCAAGTCAAGTGTCGTTGTGGGTCAACGTGCGTCACTGTACCTTGTGGTAGAGAGCGTAGAGCACGTGTAGCTTGTACGCAAACTTGCAAAATACCATCAAAATGCCATCACCAAAACATGCACAAATGCCACAAGGGTGATTGCCCACCGTGTAATCAAGTGTGCGGTCTGAAAAACGATGTGACAAAATGTGATCATATTTGTCCAGCGCGGTGTCACGCCGCTGTGCGAGTTCCTTTCAAGCAACCTTCCACCACTAATATATTTGACTACAAATTTGATAATTACGAGATTAAGAGTCTGCCACATCCGAAATGTGAGAAGAAAGTAATGGTTCCCTGTATTGGAGGTCACGAGATTGCCGAGTGGCCATGTTGGAATTCAAAACCAACCTCTTGTCAAAGACTGTGTGGGCGGAAATTAAAATGTGACAATCATACATGTGGTCTAGTTTGTCACAGCGTACCTAATACATCAGAGATGTCGGAACAAGAAGGCTGTGCACCATGCACTGAGGGTTGTCATGTTGCACGTCCACCGGGCTGTGTTCATCGTTGTAAAAGACCTTGCCACAAACCACCGTGCGATTCGTGTGCGGCAACAATAAAAGCGACATGTCACTGTGGGCTTTCTCAAGTATACTACAAATGCTCAGAGTTCTATTCCGCAGAGGAGGGAACACCAGCTGAAATCTCCATCGTACAGGAAAAACTTAAGTCCTGCGGAAATCGTTGTATCAAAAATTATCCATGTGGTCATCGTTGTTTAGGTATCTGTCATTCCGGTCCATGTCCCAATGCAGAAAACTGCCGCAAAAAGGTAAAAATCTACTGCCCCTGCAAACGCATAAAAGCTGAAATATCATGCGATAAATTCCGTTCTACTGATGGCTCCCTGCCATGTGGTGATAGCTGCGAGATCATGAAAGCAGCTCAGGACAAAATCAAACAACAAGAAGCTGAAAAACAACGTCTCGCCGAGGAGGAGCGTAATCGCATCGAACTGGAACAATTTGAGAAACGATTTGGCAAACGAAAACCTCGTGAACGTCGTGTAGTCGCTCAAGAAACcgaaatcaacaacaacaaaacgcgGGTTTTAGTGACCGCTACAATCGTAGTGACTGCAGCTGCAGCTTTAGGTTTTTATTGTTATCATTAG
- Protein Sequence
- MSASNLSKQKKSRKNAPSASSRQREETSNKNLQSNNFNEIQTRNMEIAKKITENYESSSDEEQLDGSQILEKLYKNYAGGNVQLQKTAAFLENVLQSGSAICLICIGSVKRADPIWSCKYCYCVLHLLCVKRWANDSIALLKEKGTEEQGYYNNLGEFIPKKIRAVKWCCPQCRRDYKPDEKPTQYECFCGKEIDPPNKDWLVPHSCGETCEKPLQPECGHKCLLLCHPGPCPPCAQSILVSCKCGKSPPKMVRCFQKTWTCDRKCPKILPCGKHQCDQVCHAQGQCPPCTKTSLQKCICGNEEAVRSCSQRVWQCKKVCNNPHSCGIHQCKKVCHKGPCEECPRSLARKCPCGKTSKLAPCNEEIETCNNTCQKLLSCGKHFCIQKCHKGDCSLCLIITKKTCRCGMHEKELPCWKTFLCETKCKKTRDCGKHACNKKCCDGQCLPCDKICGKLLTCKKHKCNSVCHDGPCYPCKLKSQVKCRCGSTCVTVPCGRERRARVACTQTCKIPSKCHHQNMHKCHKGDCPPCNQVCGLKNDVTKCDHICPARCHAAVRVPFKQPSTTNIFDYKFDNYEIKSLPHPKCEKKVMVPCIGGHEIAEWPCWNSKPTSCQRLCGRKLKCDNHTCGLVCHSVPNTSEMSEQEGCAPCTEGCHVARPPGCVHRCKRPCHKPPCDSCAATIKATCHCGLSQVYYKCSEFYSAEEGTPAEISIVQEKLKSCGNRCIKNYPCGHRCLGICHSGPCPNAENCRKKVKIYCPCKRIKAEISCDKFRSTDGSLPCGDSCEIMKAAQDKIKQQEAEKQRLAEEERNRIELEQFEKRFGKRKPRERRVVAQETEINNNKTRVLVTATIVVTAAAALGFYCYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -