Basic Information

Insect: Chalcosyrphus nemorum
Gene Symbol: ush
Assembly: GCA_949716465.1
Location: OX454335.1:28487861-28494408[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 1 10.1 0.0 1 20 201 220 201 222 0.90

2 9 0.00024 0.021 15.4 0.8 1 23 269 291 269 291 0.98

3 9 0.025 2.2 9.0 1.0 2 21 316 335 316 336 0.92

4 9 0.041 3.6 8.4 2.9 2 21 703 722 702 723 0.93

5 9 0.0074 0.65 10.7 0.0 3 21 760 778 758 779 0.92

6 9 0.65 57 4.6 0.1 1 23 829 851 829 851 0.83

7 9 0.012 1 10.1 1.3 1 23 857 879 857 879 0.99

8 9 0.00016 0.014 16.0 0.6 1 23 948 971 948 971 0.96

9 9 0.36 31 5.4 0.7 2 20 1104 1122 1103 1124 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	1	10.1	0.0	1	20	201	220	201	222	0.90
2	9	0.00024	0.021	15.4	0.8	1	23	269	291	269	291	0.98
3	9	0.025	2.2	9.0	1.0	2	21	316	335	316	336	0.92
4	9	0.041	3.6	8.4	2.9	2	21	703	722	702	723	0.93
5	9	0.0074	0.65	10.7	0.0	3	21	760	778	758	779	0.92
6	9	0.65	57	4.6	0.1	1	23	829	851	829	851	0.83
7	9	0.012	1	10.1	1.3	1	23	857	879	857	879	0.99
8	9	0.00016	0.014	16.0	0.6	1	23	948	971	948	971	0.96
9	9	0.36	31	5.4	0.7	2	20	1104	1122	1103	1124	0.91

Sequence Information

Coding Sequence: ATGAAGGGGTCTAAGATTACTCTCACCATTCCTAGTGCAATCATCTCTGAAAGATTCTGTGTTTTAGCACAGACAGTGCCTAGCCAAAAACTGCATGAACGAAGGTCAGAGCaaacaAAGGATCTTAGCCCAAGCGATTTGAATGAGCAAGCGGATGCGGCATCTTCAGCGGACGTAGATCAACCGCGAACACCCTTCACAACTGAATCCCTGATGGAGGACAACAATCGGCCATCGTCGAGTACACCTCGGACTCTGTCACCGCCCTCGGATCCGGAAGCCGACGATCAACATCCACCATCGGTACGTTCGGATCAACAGTCGAGGGCGAATTCACCCCTAGAGCATGATGACAGTTCATCAATagttcctgctgctgctgcggccgCAATTTCTGTGATTCCTAAACTGCGGCTAAATGCGCTCTTAGCTTCTGATCCAGCTCTAAATCCTGATGcgagaaatttgaaaatacttcACGAGGAATCGACCAAGAACCATCACCAGGAGGAGGTCCCCTCCACAGCCATCGTTGATCCAAAGGTTGGGGCGAAAAACCAATCACCAGCTGTGGTGGACAATGCACAGCGGGTGAAGGTGTTTATGTGTCTTCCTTGTGGCATTGGATTCTCATCGAGGTCCACACTGGAGGCACATCAAGCCTACTATTGTTCACATAGaaaagaaatagaagaagatCCAGCCGGAGGAGGTGGCGCCGGAAGCGCCTCATCGGGTGGAGATAAAAACTCCACCATAACATCCGGTGAGCCATCAGTAAAATCCATTAAGACTGGCAAGCAATACGCTTGCACACAGTGCTCCTACAGTGCCGACAAGAAGGTCTCGTTAAATCGTCACATGCGTATGCACCAAAGCTCACCGGCGCCAAGTTCGAACGCCTCGAATGGTGGCGATGATAGTTCTAGTCAAcaaatCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTGAAAACATATCGAGCACATAAGCAACACTATTGTAGTTCTAGGCGCAATGATGGCCAAACGACACCAAAACTAGCAGAACCAAGTTTGAAAACTAGTGGCGGCTCAGTTAGTCCACCACAGGCGCGAACGAAAACACCAACCCCAGCCGCTGTGGTAGCAgctgcagcggcagcagcagccgcCGTAACTCCACAGCCATTTATTGCTCTGCCAACAAATCCTATTCTTATTATACCGTACTATTTGATACGAGCGGCCAGTATGATACCGGGACCATTAACATCTGTGTCGTCGGGCATTGCGAACCCGGAAAGTACATGTTTCTCGCTAGAAAATGGATCTCTTAAGCCCATGGCAACCGCCTTAAGTACCAGCAGCATTACGAACAACCAAATTCCACATGTAGAGTCAACGCCACGTGCACATcctccaccaccgccgccaagTAGTACTCCATCGAATAATGACTCAGGAGTGGCGGCAGCGCCGTTATTAACAGAGAAGAACTCACGTGCAGCATCCGCGAATAGTTGCAGTGAATCTGTGAAGCAGAATAAGAAAGATGGCGCTTTAAGAGATTTTGCGCCTCTGGATCTATCACTGCGACGATCGCCCATTCAAAGAGCCCAGCGAGTCCGCTCGTCATCTAGCTTCATGGCACCGGGGAGCGATGATCGAATCGATATTGAGAACATGATGGAGGGCAAGGAGAATCTATCGATCGACAGCGGTAGCATGACACCCGAACAAATTGTCTGCGCTCCATCTCTGCCGAATAGTCCTTCGATGAGTCCGTCGCCGAAGAGACGAGCACTCAGTCCACGGAGTAGTAGTGCGGCTTCAATGTCTCctgttccgccatcggttatGGACCATCTACCGCTGAGATCCATGCTTCCCGCTGATATCGCCATGAAACTGACTGAATCGAATATAATTCCACCACTGATCGCCAAACAGAATCTTGAATTGGCTTTCAAACTGTCGTCTGCTGCTGCAGCTGCGGCCAATAGCAAACAGGGAGAGTCTGGGAAGTCATCACTTTTGGGTCTCCCTGGTGCGCCAATAAGCGTAGGACCAGCATCCAGCGGACAGCCGCAGATCTTTGTCAAACAGGGTGTCTCGAAGTGTAAAGAGTGCAATATCGTGTTCTGTAAGTATGAGAACTATCTGGCCCACAAACAGCACTACTGTTCCGCTAGGAATCAAGAAGACTCCGATAACAAAATCAGTACTCCCCCATCGGCCTCGAATTCTGGCGTCGAAACGAATCCAATTGCCTATCAGCAGTTGATCTGTGCAGCATGTGGCATTAAATACACTTCACTGGATAATTTGAGAGCACATCAGAAGTTTTACTGCCCCAAGGGAGGAGGTGATGCGTCTGCTACTGCACCACCACCAGTCGCCGCCAAGGAGAAATGTTCCAAATGTAAAACTGTGCACGAAATCGGTCAGTCCTGCCCTCCAATGGCTGCAGCAGCCGCACAGCAACAAGGTTCCTACAAGTGTCCCGTTTGTGATGTTGTCAGCTTAACAGCTGCTGAGAGCCGGAAACATCTTGAGACTCATGGGAGTGTTAAGGCGTTTCGTTGCTCAATTTGTCGATACAAAGGCAATACGTTGCGTGGTATGAGGACTCACATTCGAATGCATTTCGACAAGAAGACATCGGATTTTAACGAAGAGAACTACATGTCGTGTATTTTAGAAGACGACGGATTAGAGATTCCTAGCCCAGCATCACTGAGTCAGGAACAGATTTCGCAATTCGCTCAACAACACCTGCTCCAGCAGCAACAATCCTCagcgcaacagcagcagcaacaacagcattcACCACAGCATCCCCAGCAGATTTTCAACTGTGAGATCTGCAACTACTCGTCTTCATACAAGGGCAATGTGATGCGTCACATGAAACTGGTCCACTCTCAGCCTGGCACATCTCCGTCGATTTCCCCCGAAATAATGATGGACGAGGGAGAACCCACTACTCGTAGTCTTAACGGAGACAATGGCAACAGTCTTCCAGAAggATTCACCATCAAAACAGAACCACTCGAACCAACAGCCACAACTGCAACAGTCACAAAGAACAATAACAATACCACtccgaatcatcatcatcatcatttagaACCGTTAGCTCAGATCAAATCAGAGCCAATAGACATAACAGATGCTGTCATCAGATCTCTACCATCGCCATCGATTCCACCACCACCGTTGAACTCATCTTCACCACTATCTGGGGATGAGAATTCTTTGCTAAGAAATACGTCAGCTGCTCTTGCTTCGGCCGGTGGAATGCCATTCAATCAGAAATACTGTCAGACGTGCGATATCTCTTTTAATTATATGAAAACCTATCTGGCGCATAAGCAGTTTTATTGTAAGAATAAAACCACCCGTGGCGATACGGACAGTCCGAGTCCGATTCCACCAGTGCAATCGCCaactttattgaataaaaataaagagaactTGGAAGCGGCTATGCTATAG
Protein Sequence: MKGSKITLTIPSAIISERFCVLAQTVPSQKLHERRSEQTKDLSPSDLNEQADAASSADVDQPRTPFTTESLMEDNNRPSSSTPRTLSPPSDPEADDQHPPSVRSDQQSRANSPLEHDDSSSIVPAAAAAAISVIPKLRLNALLASDPALNPDARNLKILHEESTKNHHQEEVPSTAIVDPKVGAKNQSPAVVDNAQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEIEEDPAGGGGAGSASSGGDKNSTITSGEPSVKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQIDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLAEPSLKTSGGSVSPPQARTKTPTPAAVVAAAAAAAAAVTPQPFIALPTNPILIIPYYLIRAASMIPGPLTSVSSGIANPESTCFSLENGSLKPMATALSTSSITNNQIPHVESTPRAHPPPPPPSSTPSNNDSGVAAAPLLTEKNSRAASANSCSESVKQNKKDGALRDFAPLDLSLRRSPIQRAQRVRSSSSFMAPGSDDRIDIENMMEGKENLSIDSGSMTPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASMSPVPPSVMDHLPLRSMLPADIAMKLTESNIIPPLIAKQNLELAFKLSSAAAAAANSKQGESGKSSLLGLPGAPISVGPASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDSDNKISTPPSASNSGVETNPIAYQQLICAACGIKYTSLDNLRAHQKFYCPKGGGDASATAPPPVAAKEKCSKCKTVHEIGQSCPPMAAAAAQQQGSYKCPVCDVVSLTAAESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPASLSQEQISQFAQQHLLQQQQSSAQQQQQQQHSPQHPQQIFNCEICNYSSSYKGNVMRHMKLVHSQPGTSPSISPEIMMDEGEPTTRSLNGDNGNSLPEGFTIKTEPLEPTATTATVTKNNNNTTPNHHHHHLEPLAQIKSEPIDITDAVIRSLPSPSIPPPPLNSSSPLSGDENSLLRNTSAALASAGGMPFNQKYCQTCDISFNYMKTYLAHKQFYCKNKTTRGDTDSPSPIPPVQSPTLLNKNKENLEAAML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223805;
90% Identity: -
80% Identity: -