Cnem002668.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:39937280-39944157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0025 0.21 12.2 0.1 1 23 174 196 174 196 0.96 2 10 0.00026 0.023 15.3 2.0 1 23 399 422 399 422 0.95 3 10 0.00017 0.015 15.8 1.0 1 23 434 456 434 456 0.97 4 10 0.027 2.4 8.9 0.2 1 20 527 546 527 547 0.91 5 10 0.0011 0.095 13.3 0.6 2 23 582 603 581 603 0.96 6 10 0.00028 0.024 15.2 0.2 1 20 617 636 617 637 0.97 7 10 0.42 36 5.2 1.5 2 23 672 693 671 693 0.93 8 10 0.16 14 6.5 5.9 2 23 706 728 705 728 0.95 9 10 2.4e-06 0.00021 21.7 1.5 2 23 823 845 822 845 0.97 10 10 0.0035 0.3 11.8 1.3 1 23 854 876 854 876 0.98
Sequence Information
- Coding Sequence
- ATGGCCCTTCCCTTACAATTCCGTGATCTATGCCGAGCCTGCATGAAAAGGCGCGACGATATgcgaatgtttttcttttcgagAATCAATTCGGTGGATGTTGCCTCAATGCTAACGAAGATCGCATTACTTCCCGTCGAGCCATCGGATAGTCTACCAAAAGTTCTGTGTAGCGTCTGCATAAGGAAACTAAACGACGCATATAACTTCCAGCAAATGTGTATCAAGTCACATATAACTTTCAATGATATGCTGCAGACCCAGCAATGGCCCCGTGGGGACGATATTGTCATTAAAAAGGAGCCCTGTGAATTTATGATCAGCGCAGTGGAATCTCAAGTTGATGAGAGTGCTGCTGATGGGGATGATGATTTTATAATGACAACTAATAACCCGGCTTTGACAGCCGAGACAATACTACTGCGTGAACCAAAATTAGAACCGGACAGTGCAGAGAACTCCCAAGGGGGTTcgattaaaaatgaaaagtgttCAAAgagcaTGGGGAAGGTGAAGAAGTTTACGTGTAATTTTTGTCGTGATGTGTTCGATACTTGGAACGAATTAACCGTTCATATCGCCGAGCATAAGATGAAAAACACTGCAGGAGATGATAGCAGCTGTGAAGTGCCAGAGAAGAGGAGGAAAATATCTCAAGCCAGCACATCTAAGGAGGTGTTCCCAGTTGAATTGGGATTCAGAATTGAAAATTGTGCATACGATGGGCGTAGCGATAAcGGTTCGATTGATGGCCTCCCCCTTGAGCCAATCTGCAATGTACAAGTCAAAGAAGAGATAGATTCAGATCACAGTGCTTCCGAATACGACGAGGAGGATAATGAAACCATCAAcAATAAATACAATCCTAATGAAGATGACGAAGGAGACGATCCAGGAGATTATCGACTTCCAGTTAAGAATGAGAAACAAGAGGGCGAAGGCCGTAACTTCGTAAATTCCAAGAGTACAGTTTGCGAAATGTGTGGGTTCAAGCCGAAAATTCCTGCTCTAATGCATGCCCACGTACGCAATCGCCATCCCGATAATTACATGGAATACGTAAACAATTTGAAGGCtTCTGGAGAATGGGTGGTCAAGTGTAGGATTTGTGACGTTTATCTATTCAGCAGCACTATATACGGACAGCATTTGAAATATACTCATTCGCAAATTGTGAATGACTGCAGTGGCTATTTCGAGTGCAACATGTGCGATCAGACTTTCAACACTAAAAATGATTTCTTCTTGCACAAGAATCAAGTTCATAATATGAGACGAATTAATAAGGCAAAGCAGATTTTTATGTGTCTCCTGTGTGATAAACAGTTTGGAAGATACACCAACCTGCAACAGCACGAGGAAACACATGATTGTGATGGCACAGGTAATACAGCCGGTGGCAGCAGCAGTGGTGGCAGTTCTGGCAGCTGCGGCAGCGCAGGTGTGGGTGGTACAAGTGGTATACTAAGAAAGAAGAGAGTCGAAACACCAGTTGATGTAGCGTCACCCGTTACACCGACAGTTAAATCACCACCCAAAAAGACcaacaccaacatCACAACATCGGCGGGAGGAAAGTTCCCGTGTCATGCATGCGACAAGTCATTTGTTACTGAATTCGGTCGAAGAGTACACATTGGTTGTGTACACAAGGGAGTGGAGAAGACTCCGCCAAAATATGTTCAAGCCAGCACCGCCATAACTTACAACCCAAAACCCCCTACACCACCAGTACCCGACATCTATtgcgaaatatgtgaaaagcATTTTGATTCAGTTACGGAATTGGATTCGCATATGCAACAGCACAGAGAaaATAGCAACATCACTACCTCAGCGGGTGGAAAATTCCAATGCCACGCATGTGACAAGTCATTTGCAACTGAATTCGGTCTTCGAGTTCACATCGGTTGCGTTCACAAGGGCATGGAGAAGCTTCCGCCAAAAAATGGAAAACCCAGCACCGCCATTGCACACATCCCAAAACCGCCTCCAATACCAGTTACCGATAGTTACTGTGAAATATGTGAGAAACAATTTGACTCGGTAACAGACTGTGGATCTCATATGCAGAAGCACTATGAAGTCGCATACACTTACAGAGAACGCACAATACGCTGTAAGGAGTGCAAACACGAGTCCAATACTCGTACGGAATTTAAACATCACATCAAGCTAAGACACAAGGAAATTTACAGGAAACGTATTGCTGGCCTGGCAACAATGGATCCAAAGTTTGAAGCGTGTAACTTGTGCTTTATGCCGGTTTTCTATACAAAAATAATCAGACACATCAACTCGCATTACATGAGAGAGAACGAGAGGAGAGATGAATCTGAAGAATTACTGACTCCATCATCTCACACCACAAAGTCACCAAACCCAGTCTCGAAACTGCTTAAGACCTCTCCCAAGGCCATCCTCTCTGCTCCGTTGCAGCATCCAAATGGAAAGACTATTAAACTTAAATGCAAAATTTGCTCGAAATTTTACCCAGACAAGTCATCTCTCATGAAACATATGTTGACGTTCCACAAAAAGACTGATGGAAGGAAACACTTCAATTGCAAGATATGTTTCCGTTCCATCACTGGCTTACAGAATTTTAATTCTCACATGATGTCACACAAAGGCGACTATCCCAAAAATAAACCGAAGCAGTAA
- Protein Sequence
- MALPLQFRDLCRACMKRRDDMRMFFFSRINSVDVASMLTKIALLPVEPSDSLPKVLCSVCIRKLNDAYNFQQMCIKSHITFNDMLQTQQWPRGDDIVIKKEPCEFMISAVESQVDESAADGDDDFIMTTNNPALTAETILLREPKLEPDSAENSQGGSIKNEKCSKSMGKVKKFTCNFCRDVFDTWNELTVHIAEHKMKNTAGDDSSCEVPEKRRKISQASTSKEVFPVELGFRIENCAYDGRSDNGSIDGLPLEPICNVQVKEEIDSDHSASEYDEEDNETINNKYNPNEDDEGDDPGDYRLPVKNEKQEGEGRNFVNSKSTVCEMCGFKPKIPALMHAHVRNRHPDNYMEYVNNLKASGEWVVKCRICDVYLFSSTIYGQHLKYTHSQIVNDCSGYFECNMCDQTFNTKNDFFLHKNQVHNMRRINKAKQIFMCLLCDKQFGRYTNLQQHEETHDCDGTGNTAGGSSSGGSSGSCGSAGVGGTSGILRKKRVETPVDVASPVTPTVKSPPKKTNTNITTSAGGKFPCHACDKSFVTEFGRRVHIGCVHKGVEKTPPKYVQASTAITYNPKPPTPPVPDIYCEICEKHFDSVTELDSHMQQHRENSNITTSAGGKFQCHACDKSFATEFGLRVHIGCVHKGMEKLPPKNGKPSTAIAHIPKPPPIPVTDSYCEICEKQFDSVTDCGSHMQKHYEVAYTYRERTIRCKECKHESNTRTEFKHHIKLRHKEIYRKRIAGLATMDPKFEACNLCFMPVFYTKIIRHINSHYMRENERRDESEELLTPSSHTTKSPNPVSKLLKTSPKAILSAPLQHPNGKTIKLKCKICSKFYPDKSSLMKHMLTFHKKTDGRKHFNCKICFRSITGLQNFNSHMMSHKGDYPKNKPKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223753; iTF_01542481; iTF_00241119;
- 90% Identity
- -
- 80% Identity
- -