Basic Information

Insect: Chalcosyrphus nemorum
Gene Symbol: -
Assembly: GCA_949716465.1
Location: OX454333.1:13181122-13186713[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.47 41 5.1 3.9 1 23 1193 1216 1193 1216 0.95

2 12 0.00023 0.02 15.5 5.3 2 23 1375 1396 1375 1396 0.97

3 12 0.00046 0.04 14.5 0.4 3 23 1404 1424 1402 1424 0.98

4 12 2.5e-07 2.1e-05 24.8 3.6 2 23 1431 1452 1430 1452 0.97

5 12 2.4 2.1e+02 2.8 0.1 5 23 1465 1483 1463 1483 0.96

6 12 0.0071 0.62 10.8 3.4 3 23 1490 1511 1488 1511 0.95

7 12 0.13 11 6.8 0.1 2 23 1522 1542 1521 1542 0.96

8 12 6.7e-05 0.0059 17.1 0.8 1 19 1548 1566 1548 1567 0.96

9 12 5.4e-05 0.0047 17.5 0.5 1 23 1578 1600 1578 1600 0.99

10 12 0.0002 0.017 15.7 9.0 1 23 1606 1628 1606 1629 0.96

11 12 0.0011 0.092 13.4 4.7 1 23 1634 1656 1634 1656 0.98

12 12 0.0013 0.11 13.1 6.0 1 23 1662 1684 1662 1685 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.47	41	5.1	3.9	1	23	1193	1216	1193	1216	0.95
2	12	0.00023	0.02	15.5	5.3	2	23	1375	1396	1375	1396	0.97
3	12	0.00046	0.04	14.5	0.4	3	23	1404	1424	1402	1424	0.98
4	12	2.5e-07	2.1e-05	24.8	3.6	2	23	1431	1452	1430	1452	0.97
5	12	2.4	2.1e+02	2.8	0.1	5	23	1465	1483	1463	1483	0.96
6	12	0.0071	0.62	10.8	3.4	3	23	1490	1511	1488	1511	0.95
7	12	0.13	11	6.8	0.1	2	23	1522	1542	1521	1542	0.96
8	12	6.7e-05	0.0059	17.1	0.8	1	19	1548	1566	1548	1567	0.96
9	12	5.4e-05	0.0047	17.5	0.5	1	23	1578	1600	1578	1600	0.99
10	12	0.0002	0.017	15.7	9.0	1	23	1606	1628	1606	1629	0.96
11	12	0.0011	0.092	13.4	4.7	1	23	1634	1656	1634	1656	0.98
12	12	0.0013	0.11	13.1	6.0	1	23	1662	1684	1662	1685	0.96

Sequence Information

Coding Sequence: atgGGTGGTAACGTACAGTGTCCAGTATGTACATTATTTCTGCTTCCTGGCATGGATCTGTCCGATCATTTGGAGACACATCCCAAGGAACAAGTCATAAAGGCACTCGTACAGTTGAGCCTTAAATCGGAGGTAACTGAGACAGTAACGCCAGATACCCCGAAAAAAGTCAACAAGTCACCTTTCGTCGAAAATGGTATTAATCATCATGCAACAGACGATGAGAGAACAACTCCTATGTCAGAGATTAGCGGGAGAAGTGGGAGCAGTAGTACACCTGCTTCGGTGGGGTTACATGAAAAGAGGAGGGCGGTAGAAGACAATAGTTCTGCACTACCTCCGGTacctcaaaatattttattgaatagaCAATGTGGATATCTATTTGAGAATAATAGTAATAGCAGTAGTAGTAATAGTAATTTCTTTGGACCACCGACACCATCTTATTATCATAATCAAAatcatcagcaacaacaacagcagcagcagcaacaccagGCGCCGCCGCAACCCTCGCCgccgcaacagcagcagcagcagcagcaacaacaacaacagcaatcgcATCATCATACTCATCAACAAAATTATCATCCCTATCATGGTCATCCACATGGTGGTGGTAACTCTACAATTGGCCAAGCACCAGCACAGCCTTCAATGCGGCTTTTCTCCTATCAACCGCCACCCAAACCGTTGCAACCACCGCCCGCCTATGGCGCCGCCATAAGTCAACTTCGATCTCAAAATAGCCAAAACCTAATGGTAAACAACGTCAATCGCCCAATTTTTTCACCGGGAAATTATAcacaaacatcatcatcatcatcattgtcatcGTCTTCTACGATACCATCACGGTTGCCTCCACCTCTTCCGCCACCACCTTTGAATCAGCGTTATCAACCTAGCTTCCCGCAAATGGAGACTACATTTGCCGCCGATTCATGCGACAATAATGTTATGTCTCCACGAAGAACATCTTTGACACCACCACTGCGAGCTCCTCCTCAATTATACCGTTCGCCATTATCAACCTCCGGACAGTACTCAAGACAGTCCAGTTCTCCGTACTCAGTGATGACAGGTTCACCATCTGTCTTAAGATTCGCTGAATCACCCGTCACAGCGCATTATCTAGAGCGAGAAAATGGTGATTTCATTGTTCAAGAAACACCCAAGCATGTTGTCGAATGTGTGGAAAAGGACGATGGAGAGTTTTCAGTTATCGAACGAGTCTATCATATGCCACCGAGTGTTGTTCAAATAAATGAGGATCAAGACGATGAATTATCTGATCATGGATCCGGTATTGAAGATATGAAAATGATAGAGGATGATAGACCAAGTGGCACGTGGTCCAGCGGACGGTCACCAGAACAAACGCAATCAGtacagcagcgacaacaacaaaagaaatccGGAATTACCGTACTCAGTGATGTACAATTAGACTTAAATGAATACCTAGACTTAATGGGAAATATAATAGCCTCCAGTAAGGTGGCTAAAACACGTACTGACATgataaaagtagaaaaattcGAACCCGAAGAAGTGAAAGAGGAACTAGCCAACAACGCAATGTGCGATAAGGATGACGACATTTCAGAGGATATTCCAGACGAGACTAAAGAGGAACAGGAGAACTACAGCGATGAGCTTTCGCGTTGCTCTCTAGCAATAGCCACAGCATCTACTTCCGCATCCATTGTGGAGTCACCAGTAACACCAGGAACGACAAGCGTCATTCGATTGGCAGCGAATTCTAATGCAAGAAGCAATACACCCTCAACGTCAACGAAAGTTGAGGAACCTATAAGAACTGAAACACCTAGACCTACAGTTGAATTGCACACGGCAAGTACTAgtataaaaataacaaagattGAGGAAGCTGTTTCCATGCAAAACGCAATGGTAAATGAAACAAGCACCAGCGGGACATCTTCAGCTAAGATTGAGGAAACAAGTTCAGATACACCATCAATGGATGATGTAGAAGCAATGAGTATAACCGCAAGTGCAACCACAACAAAAGTTGAGGTATCagaacaacaagcaacaagtcAAGGTGATTCTCAACTGCATGAAGGACAACCAGACGAATCTACACCAGAAAATGTAGACAAACAAGAAAAGCCTGAAAAAGTAGTCAAGGAAGAACAAgtgaaaagagaagagaatccaaCAATCTTTGCGTATCAGCATCAGTCAGTCAAGCGACCAATCAAAAAGGCGCCGAAAAAGCTTATTATCAAACCAAAAAGCAAAGATCCCATAACATCTCATCCCGCAACGCTACCCCAACAAGcagcaccaacaccaacaccaacaccaataCCTATGCCAATGCCCATGTGTCGACCATCAACCTCAACGGATACATCTCTACTGGAGGctccacaaaaagaagaactcttGTCCGAAGCACCTGACGCAACTGAGGAAGATGACCTAAACAGCATTAAAACAGAATGTTCTCAAGTTGCTGGATCAGATTCTGTTCCACCACCTCTTCTAGCTGACGCTGATGAAAAACTTCCacccgatgatgatgatgatgatgatatacAACCGTCTACATCGACAGTGAGAATCACAGACGAGGAACAACCTACGCTGCCAATTAACTCTACAGAAGAGAAGCCCACCGCCGATTTGACAGCATTCCTTGATCACTGCATGAAAAAGGAAGACGTCGAAGTGCACCCAATGCACTCCATATTCGGCATGGAAATCGAGGGTCCAGTGGAGACTCTAGATGATGCATTAagtccaccaccgccaccacctgaGTTTCCATCGGCTTCTCTATTCGCCAAACCATTAACAAGCTCTGAACACCTTTCGATGTCTGAGTCCATTCACGCGGATAGCAGTGATATACAAGACCAGGAAACGGATCAAAATCCACcccatcaacagcagcagcatcatcaacaacaaccaaATAACTCTGCCTATGTTGAATATCCATTCAGTTTTCTGTACGGCGGTGAAGCGAATCAGCAACCAGAGGACAACAAGCACAATATCTCGCCGCCAATGTACTGCAGTGAGGATTTCAACAAGTACAGTACAGCAAGCACAAGTGGAGGCAATAGTGCCAGCTGTACATGGTATCAGTCTCAAAGTAGTGAAATTGATTTCGAAATGGACGGCAAGGGGAGCTATCTTGACTTGGACTCGTGTAAAAGAAGTACATCGTTTGCAGCAGCAACTGAAGGCAGTATGCCAACAAATGACACGCTAAACATAAGGACTGACGAGAAGATGCCAGCTAAAGGCGAGATTTCCGAACAAGAGAGCAATTGTGGCGTAGAGAATTCATGGAGTCAACCGCTTTACAACGAGTTTCCGGTTCGTTTTCCGCATCCGTATCAAAATTTCATGTCAACACATGAAAGCTGGAGCAACGATCACTACTTTCGCCCACAGGATCTAAGCTCATCTGTGGAGACAAAAAAttttgctTTGCGGTTAACGGATGATTCACCTATAATGGACACACTACCATCAACATCGAAGCGAAAGAATAAATCACCAGTAAAAGTGCAACGCAAGAAGACTTTCTCTTGCACGCATTGCAATACACACTTTCCATTGCTTAAGGAGAAGAATGCGCACTTGATCAAACAACATGGCTATAAGCGTGTTAATCGACGACTTGTACGTGACCCACCAACTTCAACAGTTACCACGGCGACATTGAATTCAATCGACGCTGGTGCTGCCTCTTTGCTGTTTGGTCTTGAGCCAAGAGCATTGCCACCCCCACCGCTGGCCGATGAGGAAGACTCCAAAGCTGCGATTGTGAAAATCGAGCAAGAGAATCAAGATCAAAAGGACTGCAAAAAGGGCATCGCCAGTCTAAAACTTTCAGGCGGCACTTTGCAGACTACAAGTGCAAGCATATCTCGCACAAAGTATGACTCGATGCGAGCACGAGACAATCGTATGCTgataaactttaatttaaatgcGCTGAATGTTAAGAACGAAGGGGAGGCGCACAGCTATTATATGGAATCGAAATCATCATTCTGCTGTTTCGTTTGCAGGCGGGACTTTCTTACGGTTAAGCTGTTTGATGAGCATTTAGCTGAGCACCCCGCCGAATGTTTCACATGTCACAAGAAGTTCACGAGGTGGAAAAACTTTATGGTCCATCTGAAGCGACATCTCGGTTGGAAGGACTTTGGCTGCACCTTTTGTGAGAAGAAATTCGTAATTCGTAGCGCCTTAGTGGAACACATGCGAATGCACACGGGTCAGACGCCTCTCAAGTGTAAGGTCTGTGGCAAAAGCTTTAAAAGATACTCCAATTTGACGCAGCACCGGAAACGTCATGGTACTAAAATCAATCGTACCAAAGAGTACGTTTGCTACTGTGGTGAAGTACTGCCATCGAAAGCGCGCTTTATCTGGCATAAAGAGACGCACGACTTGAAACCGAAATGTTGTCCCTACTGCCGGGATCGGTTTGTGCACGCAAATAGTCTGAGGCGGCACATTCGACTGGCGCACTCCGATAAGTTCGATTACACCGAACCCATGGAGTGTCCAATGTGTAAGCAAATTTACGCCAAATCCAGCATCAAAGCGCATATGGCAACGCATTCGATGGACACGCAGCACGAATGTCTGATTTGCAATAAGTCGTTCAGCACCAAATGGAATCTAAAGATCCACAATTGGGTGCATGCGAATCGTACAACAAAGCCCTTCAAGTGTGATCAATGTGTTAAGGCATTTGTACGCGAAGTCGACTACAACAATCACATGAACTCGCATAAGCAGATCAAGCCATACACGTGCGAACACTGCGGTTGCAAGTTCATTCGTAAATACAATTACATCCGGCATCGACGTGAGCACCACGGGAATAAGAAATTCACCTGTGATCTCTGCGGTAAACTCTTCCATCGGCATTACTATCTGATTGAACACCGGCGTATCCACACTGGCGAGCGACCATTCCAGTGCACGATATGTGGCAAAAGCTCCACCACCAAGACGAATCACAACAAACACCTAAAGATTCATCATTCACGGGATCCGTTCACGTCGGAGGCGTAA
Protein Sequence: MGGNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQLSLKSEVTETVTPDTPKKVNKSPFVENGINHHATDDERTTPMSEISGRSGSSSTPASVGLHEKRRAVEDNSSALPPVPQNILLNRQCGYLFENNSNSSSSNSNFFGPPTPSYYHNQNHQQQQQQQQQHQAPPQPSPPQQQQQQQQQQQQQSHHHTHQQNYHPYHGHPHGGGNSTIGQAPAQPSMRLFSYQPPPKPLQPPPAYGAAISQLRSQNSQNLMVNNVNRPIFSPGNYTQTSSSSSLSSSSTIPSRLPPPLPPPPLNQRYQPSFPQMETTFAADSCDNNVMSPRRTSLTPPLRAPPQLYRSPLSTSGQYSRQSSSPYSVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDELSDHGSGIEDMKMIEDDRPSGTWSSGRSPEQTQSVQQRQQQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKTRTDMIKVEKFEPEEVKEELANNAMCDKDDDISEDIPDETKEEQENYSDELSRCSLAIATASTSASIVESPVTPGTTSVIRLAANSNARSNTPSTSTKVEEPIRTETPRPTVELHTASTSIKITKIEEAVSMQNAMVNETSTSGTSSAKIEETSSDTPSMDDVEAMSITASATTTKVEVSEQQATSQGDSQLHEGQPDESTPENVDKQEKPEKVVKEEQVKREENPTIFAYQHQSVKRPIKKAPKKLIIKPKSKDPITSHPATLPQQAAPTPTPTPIPMPMPMCRPSTSTDTSLLEAPQKEELLSEAPDATEEDDLNSIKTECSQVAGSDSVPPPLLADADEKLPPDDDDDDDIQPSTSTVRITDEEQPTLPINSTEEKPTADLTAFLDHCMKKEDVEVHPMHSIFGMEIEGPVETLDDALSPPPPPPEFPSASLFAKPLTSSEHLSMSESIHADSSDIQDQETDQNPPHQQQQHHQQQPNNSAYVEYPFSFLYGGEANQQPEDNKHNISPPMYCSEDFNKYSTASTSGGNSASCTWYQSQSSEIDFEMDGKGSYLDLDSCKRSTSFAAATEGSMPTNDTLNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFPVRFPHPYQNFMSTHESWSNDHYFRPQDLSSSVETKNFALRLTDDSPIMDTLPSTSKRKNKSPVKVQRKKTFSCTHCNTHFPLLKEKNAHLIKQHGYKRVNRRLVRDPPTSTVTTATLNSIDAGAASLLFGLEPRALPPPPLADEEDSKAAIVKIEQENQDQKDCKKGIASLKLSGGTLQTTSASISRTKYDSMRARDNRMLINFNLNALNVKNEGEAHSYYMESKSSFCCFVCRRDFLTVKLFDEHLAEHPAECFTCHKKFTRWKNFMVHLKRHLGWKDFGCTFCEKKFVIRSALVEHMRMHTGQTPLKCKVCGKSFKRYSNLTQHRKRHGTKINRTKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPFKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223741;
90% Identity: -
80% Identity: -