Cnem017587.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- prdm10
- Assembly
- GCA_949716465.1
- Location
- OX454335.1:50610691-50615704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00039 0.034 14.7 0.1 3 23 481 501 479 501 0.96 2 11 0.00038 0.034 14.8 1.0 2 23 534 555 533 555 0.96 3 11 1.1e-05 0.00093 19.7 2.0 1 23 575 597 575 597 0.97 4 11 0.00022 0.019 15.6 2.5 1 23 605 627 605 627 0.98 5 11 0.0064 0.56 10.9 1.4 1 23 632 654 632 654 0.94 6 11 1.1 98 3.9 6.2 1 23 660 683 660 683 0.95 7 11 0.023 2 9.2 2.3 1 23 688 710 688 710 0.98 8 11 0.00021 0.019 15.6 6.5 1 23 716 739 716 739 0.98 9 11 8.1e-05 0.0071 16.9 1.4 1 23 788 811 788 811 0.97 10 11 6.1e-05 0.0054 17.3 0.7 1 23 833 856 833 856 0.96 11 11 0.017 1.5 9.6 0.9 2 23 880 902 879 902 0.97
Sequence Information
- Coding Sequence
- ATGGCTGAGAATTTGAACAAATCAGAGAATGCATTGGAAGCGGAAGGTCAGTACTCCTACGGGGGATTCAGCTCTTACGATCCGAATATGTGCACAACTGCGGCCCGTTTCAGTCCTTTCTATGGCAAGGGTAATGCCACACAATCCAAGGAAAACACCCAAATGCCTTACAAAAATCTAATCTATGTACAGTCTAGCGATATCGCGGCGCAGGATGGCGAGACTTCTAGACGGGCGCCGGAACACTCTAAAACAGTAAATCCGTCATATCTCGGATATAACAATGAAATCTTACAAGCTGGTGCTGAAGTATTTGTTGCCAATCAAATTGAAGACTCAGTGGCGTACAGTGCCAAAGAGGAGGAAGCATCAGTGCTTGGCGTTGGAATCGATTACATACAACAGATTGATCAAGGCATCGATGAGGTTACTGGGGAGCCTATAACCGCTGGCATAGTCCTGCATCGTTCTCCGAATGGTCACCTCTATCAGAACTTTTATGTGACGAATGAGGACGGCACGCCAGGACAAATAGTAGAACTAGTTCCAATTGATACCGGCAATACAAACCGTTTGCAAGAAATCGAACAAGACAACTACGCCATGGAACCGTATGGATTTCCTACAGAATGCAATATGGAGACGCTCGAAGCGCAGTTGGTCAACGAACAGCCGGTAGTGGAAGATGAGGAGGAGCAGAACAATGCCTTGGCAGCAGCACAGATTTTGGAAAGAGAGCAACAAAGGATCTTACTCGAGAGTACAATGTCGCCTTTGCTGGCGGCAGTAAATGATATTACTCAAAGAGATGCAGAATTGCTTTCATATCTGAATCAACACGTTGAAAAGGAGCACATCGTAGAGCAGAGGGTAAACAATGTTGAGGAGGAATACACCAGTAGGCTAAGTACCCGCATTGAAAGGGAATCTtcagacgatgatgatgattataACAAACCTGTCGAAAGCCGTGCTAGAGCTACTCTTCCTACAAATTATCTTTATCTTGGTCCTGTGTGTGCAGATACAAACGAGCCATCAGTGTACGCTAAAAGGGCGATTCCACAGCGAACAAAGTTTGGACCTTTCGAAGGAGAAATTCGATTTACTAGTGATATATTCTTAAACATACTACGCTCTCAACAACCACGTCACTATCCACTTTTGCTGGTTGGCAAAACAAGAGTTCTTATTGTAACAAatgaaaACACTTCGAATTGGATGCGATTTGTTCGCCTCGCACAATCCTATGCTGAACAAAATCTACAAATAATCGAGGAGGGCAATCGAATCTATTTCAAATGCAATCGTGATATTCACCCTAAAGAAGAACTTCGAGTAGGCTATCATAACACTTATGCCGATAAATATTATTTACCAATTTTGGAGCCATCCATGGAAGATGCTAGGAAAAAATACGAATTGAATAATCCGTGGGCATGTTATGAATGCGATCAAAGATTCCCTACCTCGCAAGATATGCAAAAGCATTTGGAAGTGCATGACGTTGAGGATGCCTCTTGTataatttctaaaagaaaaatcaaaagaaagcgaaagaaatttaaaaaactatCGGAATTGCCAAAAAATTCCAGCAGATGTTTGATATGCTTTAAGGTTTTCATGACCAATGCAAGTCTTCGGAAACACTTTGCCACCCATTTGCCTGCAAAGAAGTCAAAAGTTAAAAACTCCGCGAAATTAGTGGAGCGTTCTACTTACAAGTGTGAGATGTGCAACCGGAAATTTTCATCACAGGATAAGTTAAAGTCCCATGAGGAGAGCCATTCAGCAAATATAGACAAACCGCACAAATGTCCGCATTGCGCCCAGCAGTGTTCTACACCAACAGCACTTGCGGCCCATATTCGCAGTCATACAAATCGTCTTTACTCCTGTGTCTATTGCCAGCAAACATTCAAATATGTGATGGATTTTAGAAAGCACGTCGTCTTGCACTGCACAGATGGAGTGTATTCTTGTATACACTGTAAGAAGAAGTACAAGGAATATCATTTGGTTCGAAAACATGTAAGAATATTTCATCCAGCTGTAAAATATCCCTGCAATGAATGCGATCGACTATTTCTGCACATGAGTTTCTTACGCCGTCACAAGGCAACGCATGCCAAAAAGATGGGCTTTAAATGCTCTGAGTGTGATAAACTATGCCGAAGTAAGCAGGAATTAAAACACCATATTAAAACTACTCACAAAGTGAGACGAAAGGTCAAGAAGCAAGCggtgaaaacaaaaattcgtaCAACTGATGGTAGCTCTAAAAATGTTAAACGATCTCCGAAGAAGTGTAATCTGGCAACTGCAACGCCACCCTCGGAAGATGATCAACAATATCAGTTCAAATGCGAAGAGTGTAGATTGTTTTTTAAGCGACGCGGCATGCTAGTCAATCACATGGCAAAAAGACATCCAGAGCGAAACATCGACATGATTGATGAATTAAATCAGCCGATTATCAAGCTCCAGACTGTTTTCAATTGTCCATACTGTCCGAAGGTATACAAGAACAATGCAAAACGCAAGGCACACATTTTGAAAAACCACCCTGGCATGGAAGTTCCTCCATCTTTTCGAAGTAATCAGACTGTCGGCTGTATAAAGGCCGATGTGCAAAAGTGTCAGCTGTGTTATAAGCAATATGCTTCTCGAACTCGTCTTCTTATACACTATCGAATGGCACATAAAAACGAGAAACCACCAGAAATCTCTCTGGATGTGCCGCCTACACGAATTCTAATTGAGGAGCAATGTACTGAACCGGTTGTTATGGATATATACAGTAGACCTCCAGTTTCGCCGGAAAATAAGCTTCTGAAATTGTCCTCGGCGGCACTTGAGTTGTCCAGCATCGAAGATAGAAAGTACTTTACGGATATTGCGGAAAGTAAAATCGTGGAGAGTGAATTTGGGGAAACTTCATCGAATACAGAGTTGAATCGATTGCCTGAGCTGTTTGAGGAGTCAATAGGTTGTATTTAA
- Protein Sequence
- MAENLNKSENALEAEGQYSYGGFSSYDPNMCTTAARFSPFYGKGNATQSKENTQMPYKNLIYVQSSDIAAQDGETSRRAPEHSKTVNPSYLGYNNEILQAGAEVFVANQIEDSVAYSAKEEEASVLGVGIDYIQQIDQGIDEVTGEPITAGIVLHRSPNGHLYQNFYVTNEDGTPGQIVELVPIDTGNTNRLQEIEQDNYAMEPYGFPTECNMETLEAQLVNEQPVVEDEEEQNNALAAAQILEREQQRILLESTMSPLLAAVNDITQRDAELLSYLNQHVEKEHIVEQRVNNVEEEYTSRLSTRIERESSDDDDDYNKPVESRARATLPTNYLYLGPVCADTNEPSVYAKRAIPQRTKFGPFEGEIRFTSDIFLNILRSQQPRHYPLLLVGKTRVLIVTNENTSNWMRFVRLAQSYAEQNLQIIEEGNRIYFKCNRDIHPKEELRVGYHNTYADKYYLPILEPSMEDARKKYELNNPWACYECDQRFPTSQDMQKHLEVHDVEDASCIISKRKIKRKRKKFKKLSELPKNSSRCLICFKVFMTNASLRKHFATHLPAKKSKVKNSAKLVERSTYKCEMCNRKFSSQDKLKSHEESHSANIDKPHKCPHCAQQCSTPTALAAHIRSHTNRLYSCVYCQQTFKYVMDFRKHVVLHCTDGVYSCIHCKKKYKEYHLVRKHVRIFHPAVKYPCNECDRLFLHMSFLRRHKATHAKKMGFKCSECDKLCRSKQELKHHIKTTHKVRRKVKKQAVKTKIRTTDGSSKNVKRSPKKCNLATATPPSEDDQQYQFKCEECRLFFKRRGMLVNHMAKRHPERNIDMIDELNQPIIKLQTVFNCPYCPKVYKNNAKRKAHILKNHPGMEVPPSFRSNQTVGCIKADVQKCQLCYKQYASRTRLLIHYRMAHKNEKPPEISLDVPPTRILIEEQCTEPVVMDIYSRPPVSPENKLLKLSSAALELSSIEDRKYFTDIAESKIVESEFGETSSNTELNRLPELFEESIGCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -