Cnem004606.2
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:79459217-79462573[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.88 77 4.2 0.3 2 23 183 205 182 205 0.91 2 17 0.0043 0.37 11.5 3.3 2 19 248 265 247 267 0.93 3 17 0.12 10 6.9 0.1 3 23 309 330 308 330 0.94 4 17 0.00052 0.046 14.3 3.3 2 23 337 358 336 358 0.96 5 17 0.025 2.2 9.1 7.3 1 23 364 386 364 387 0.95 6 17 4.6e-05 0.004 17.7 3.6 1 23 393 416 393 416 0.97 7 17 0.00029 0.026 15.1 0.3 1 23 466 488 466 488 0.97 8 17 0.012 1 10.1 0.4 1 23 493 515 493 515 0.99 9 17 0.58 50 4.8 0.2 1 23 531 555 531 555 0.93 10 17 1.5e-06 0.00013 22.3 0.9 1 23 561 583 561 583 0.97 11 17 0.021 1.8 9.3 1.2 1 23 589 612 589 612 0.96 12 17 0.21 18 6.2 0.6 2 22 618 638 617 640 0.88 13 17 0.012 1 10.1 2.7 2 23 644 666 643 666 0.96 14 17 0.00092 0.081 13.6 0.7 1 23 672 695 672 695 0.94 15 17 0.0053 0.46 11.2 2.9 1 23 701 723 701 723 0.98 16 17 0.0014 0.12 13.0 6.8 1 23 729 751 729 751 0.98 17 17 0.00026 0.023 15.3 0.1 1 23 757 782 757 782 0.95
Sequence Information
- Coding Sequence
- ATGGATTTTAATTGTTTGCGCTGTGACACTCCCTTGAGTGAGGACTACCAGCTGATCTTCGACGAAACTGGTGTCGAATTGCAGCTGGACAAACTTCTTGCTGAGCATTTTGAGATTTTCATCGAACAGGATAACAATAGAACACAGGCTCTATGCGAGGAATGTGTTCACAAGCTTACTGAATTGTATGATTTAACGCAAAGAAATGCAGAGGAAATGTTGTCTGGAAAGGAACCAGTCGAACAATTGTTCGAAAACGAGACAGATCCAGTCAGTGAGGAGTTCGAAGAGGAAGAATTGCCAATAAAACAAGAAGAGGAGCTCATTATAGATGATATAGAACATGACAACGTAGAGTCGGATGAACATTCAAACTCACTTCAGGATAATGAAGAGTTTTTCGGATTCGATGATGCAAGTGATGAGAATATAACTACATTTGAGAATGTCCAGTACTTGGAGGATTTTGAAGATGTGATTCCACAGAAGTATGTGCGAGAGGTCATCAAAACAGAGATGGAAGAGATCCCTTATGAACAGAATACATCTTGTAGGCTATGCGGTGAAGTTTTGAAGACCCACACAGCAGTTCTTATGCACGTCGCCTCGACCCATGAAACAAgctccaaaaagtatccgtgcaTCATATGTGACAAAGTAGAAGACTTCGATTCAATTAAGGATCTAGCCTTCCACATAGTACTGAAGCACTATGATCTCGAAACTATCAACATCTATTGCATGTGCCCCGAGTGCGGAAAGCGCTTTTCCGATTTCATTGAGTACAACAAACATTCTTGTTGCGTGCAACCATCAGGAGATCGTTTACAACAGGAGTGCACCGATTGCATGAATAAATTTACCTCAAATAAAAGGTATCGCTTTCATTTACAATTCCATTTAGAGAAACGGAGGCCAAAAGCATGTTTCATATGTGACGTCCTCTTTTCGAACGAAAATGATTTCTTTGAGCACGTAATGTACGCGCATGATAAGGAATCTTCTTTGACCTGTAAAAAATGCGATCGAGTGTGCACTTCAAAAAagttgtacgaaactcacatggAATTGCACAGTGCTGTGCGCTCGTTCCACTGTGAACATTGTCCGAAATCCTATTTGTACAAACAAATGCTGACAAATCATATTAATCGTCATCATTATGATTCGCAATCGTATAGGTGTAAAATCTGCAAGAAAACTCTCGCAAGCAAGCATCTCCTGTCAAGGCATATGCAATTGAAACATCTCAAAGAAACCGAGGAGGATGTATACACGTGCGCTTCCTGTGGTCTGGTGGGAGCTACAGAAAGGGATACAAAGGTAGTATCATTGAATCATACAGATAATGTTTGCGTGGGTGCTGAACTTACCAAAGAATGTTTGAAGATCGTTTACGCGTGTGAATTTTGTGAACTTGCCTTCAACAGTGTGGAAAACTTGAAATCTCATCGCAAAATCCATTCAAGCAATATATACACGTGCTGGATATGTCAATCCGAATACCCGGAGTATAAAAAGCTTAAAACGCATATTATCACGCACAAAAAGTACGATTCTAtacaaaaaacatttccaaTTAACAGGCACTACGTTTGTGATTTTGAGGCCTGTGACCAGTCCTATCTGACATGGCCGTCACTACGAAGCCATAAAGCCCGACATGCAGCCGATGCCAAATTTACCTGTGAACTGTGCAATCAAACATTTAGAACGCGATCGCAACTAAACGCTCACGTCAAAGCTCATGACAATAACGAAGAGTATCCTTGTCAATTTTGCTCTAAACTGTGTAGCTCTAACATGGCGCTATCGGTACACATTGCTCGAAAGCACAACAACAATTGTAAAACCTGTCCAACGTGCAAGGCGACATACCATTCCGAGGAAGCCCTCAACGAACACTTTGAAGCAAATCATGTCGAACTGAAATGTGAATTTTGCTGTAAAATGACGAAAAACAAACGAAATCTTGAAATACACATACAAATGGTTCACCTCAAGGCGAAGAGATTCTTCTGTTCGTCATGCAATAAGGGATACTACAACTACAGTGATTTGAAGGTTCACGAAAGAGCTGCTCACGTAGAGGCGAAGAAATACAAATGTCAACACTGTGAATTCAGCACAAGCTACGAGGCATCATTTAAGTCACACATTCTGTTGCATGAAACTAAAAAGCCATTCAAATGTGACAAATGCTCCAGGGAGTTCACCAGAAAGACATGCTTCAAGCTACACCTTCTAAGACATTCCGATATTAAACCATTTGTATGTACCTTTGAGGATTGTGGCAGAAGCTTTGTAACCAAAGGCATCCTCAATTCACATATACGTGATATACATCCAGAATttgaacaaaatattaagaAAGCTCTATCACGTTCGCATTCACGTCCAGAAAAAGGCAAAAAGTCAAGGAAAGAATCCGGTAATGTTAAATATGAAATGATGGGAACAGATGCAGATAAAGGGGCGGATAATTCAGTTTTATTTGATGAGTTGAATGCCGGACAAGAGATCATATTGGAATGTCCTGACGAGGAAAGCGACATGATTGTTGACTTGAACCTGTCCGAAAATGAAGATGAATATACAGTGCAAGTCCTCGACCAATTATAG
- Protein Sequence
- MDFNCLRCDTPLSEDYQLIFDETGVELQLDKLLAEHFEIFIEQDNNRTQALCEECVHKLTELYDLTQRNAEEMLSGKEPVEQLFENETDPVSEEFEEEELPIKQEEELIIDDIEHDNVESDEHSNSLQDNEEFFGFDDASDENITTFENVQYLEDFEDVIPQKYVREVIKTEMEEIPYEQNTSCRLCGEVLKTHTAVLMHVASTHETSSKKYPCIICDKVEDFDSIKDLAFHIVLKHYDLETINIYCMCPECGKRFSDFIEYNKHSCCVQPSGDRLQQECTDCMNKFTSNKRYRFHLQFHLEKRRPKACFICDVLFSNENDFFEHVMYAHDKESSLTCKKCDRVCTSKKLYETHMELHSAVRSFHCEHCPKSYLYKQMLTNHINRHHYDSQSYRCKICKKTLASKHLLSRHMQLKHLKETEEDVYTCASCGLVGATERDTKVVSLNHTDNVCVGAELTKECLKIVYACEFCELAFNSVENLKSHRKIHSSNIYTCWICQSEYPEYKKLKTHIITHKKYDSIQKTFPINRHYVCDFEACDQSYLTWPSLRSHKARHAADAKFTCELCNQTFRTRSQLNAHVKAHDNNEEYPCQFCSKLCSSNMALSVHIARKHNNNCKTCPTCKATYHSEEALNEHFEANHVELKCEFCCKMTKNKRNLEIHIQMVHLKAKRFFCSSCNKGYYNYSDLKVHERAAHVEAKKYKCQHCEFSTSYEASFKSHILLHETKKPFKCDKCSREFTRKTCFKLHLLRHSDIKPFVCTFEDCGRSFVTKGILNSHIRDIHPEFEQNIKKALSRSHSRPEKGKKSRKESGNVKYEMMGTDADKGADNSVLFDELNAGQEIILECPDEESDMIVDLNLSENEDEYTVQVLDQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -