Cnem000552.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:3354245-3356401[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5e-05 0.0013 19.2 1.8 5 23 268 286 265 286 0.94 2 9 1.3e-07 1.1e-05 25.7 1.1 1 23 292 314 292 314 0.98 3 9 0.00088 0.076 13.6 2.7 1 23 320 342 320 342 0.97 4 9 1.6e-06 0.00014 22.3 1.6 1 23 348 371 348 371 0.97 5 9 3.7e-05 0.0032 18.0 2.8 1 23 381 403 381 403 0.97 6 9 0.00033 0.029 15.0 5.1 1 23 480 502 480 502 0.98 7 9 0.00062 0.054 14.1 1.8 1 23 510 533 510 533 0.96 8 9 0.011 0.94 10.2 0.0 3 23 543 564 542 564 0.94 9 9 0.0033 0.29 11.8 3.6 3 23 571 591 569 591 0.95
Sequence Information
- Coding Sequence
- ATGAATTTCAAAGTAGATATATCCGCCTGTCGAGTGTGCATGAAATCCGAAAATGGTATTTCACTTTTCAAAGACCGCAGCCTTCACGAGAAGTTTGTTTACACCACAAAACTCATGGTCAAAGACAACGACAGTATGCCGGCAATTCTGTGTGCAAAGTGCATAGTGCGACTGAAAGCGGCGTATGACTTCTGTCGCCAGGCGAATAGTTCGGACAAACACTTGCGGAAGTTCATAAGTAAAATCAGCAGCGACTTTCAGGAAGTGACCAAGACACTGGCCCAAGTGGTTGAGGACGATGCCGCTATTCTAGAGGAGGACGATGGCGGAATTCATGCGCTCATTGATGAGAGTCGCGGGTTTGAACAGATTGTAGCTCCCAGCAAGCAGGAGACGGCGAGTTTGAGTGAAGAAATGGAGGTGGTCGAGATGCAGGACGAGGTTGTCCAGACCAAGCAGGAGGTATTCGAACATGAGATCTATATGGAGGAGTTCCACGAGATTATCCAAGAGGACAACTGTGACACGAATCTGTATTTGGATGAGAACTCCGAAGAGTTGCATTTGTATGAGGATGCTGATGAAttgtttgatgatgatgatggacagGAGGGTCTTGGGGAAGAGGAAGGCGGGTCAGTTGCTGCAGAACAACAACCGGAATTCCTGTCTTCTAGCATTGAAGACACTCAAATCAAAGAGGAGAAGAAACCCGCCAGGAAACGACCTCCACGCCCATCGCGAAAAACACAAGGGGAATCAGCTTCGGTTAAGCTAGAAGGCAAATCTAACATTTGCATCAAATGCAATAAAGATTTCAGTACCAAGACGAATCTAATGCGGCATATGAGCACACACGACGGGGTAAAACCGTATCAGTGCACCACTTGCGGGAAGGGATTCACACAGAATGGGTCGCTCAAGCAGCATATGTTCATTCACACGGGCGAGAGGCCACACGTTTGCACAGTTTGTCAAAGGGGATTCACTCAGAGCAAGAGTTTGATATTCCACTTGCGACGACACACAGGCGAAAAGCCGTTCACCTGCGATGAATGTGGCATCAGTTTTCGACAAAAGGATGGACTTAAGCACCACGTTTTGAAGTACCATAGCGGAGCGCCTGCTTCATCAGATCGCCATGTTTGTTGCGTCTGTGACCGCGTTTTGGCATCGAAATATTCGCTTAATGTGCATATGCGGAAACATGCCAAAACAGATGATAAAAAAGCAGATATCGGATTTGATTCGGAGACAACGCAGTCGAGCAGCAAAGAAGAAACGACCAGAAGCTCCCCACCACCATCAGCATCAGAAACTGTACAAACTCCCGCAGCGGTCGaaccaccagcagcagtagAACTCGCAACAGATGTCGCACTTGGAACTGTTCATCTGCCAACAGGCAACACTGGCGCTGGCTTGCGAatgaaacaatttcaatgcggcAAATGCTTCAAGTCCTTTCACATAAAGCGAAATCTCCTCCGTCATTTGAGAAATCACGATGTCAGTGCCTTAGAGTTACACGAGTGTGTCGATTGTAAGATAGGTTTTGACACAAAACGCTCTCTGAAGCTACATCGCCAGCGAGATCACAAGGATGTGATACCTGATTTGAATAACTGTGAATACTGTAACGCCCCATTTGTTACAGTCGCTGAACTGAGTGAGCATATAGCTAATGTACATGATGCAATCGATCAGAACTGTCCTCACTGTAATGAACATTTTAAGTCACAGAAGCTATACTATGACCATTTGCTGGAACATGAACACATGCTGGAAGATTAG
- Protein Sequence
- MNFKVDISACRVCMKSENGISLFKDRSLHEKFVYTTKLMVKDNDSMPAILCAKCIVRLKAAYDFCRQANSSDKHLRKFISKISSDFQEVTKTLAQVVEDDAAILEEDDGGIHALIDESRGFEQIVAPSKQETASLSEEMEVVEMQDEVVQTKQEVFEHEIYMEEFHEIIQEDNCDTNLYLDENSEELHLYEDADELFDDDDGQEGLGEEEGGSVAAEQQPEFLSSSIEDTQIKEEKKPARKRPPRPSRKTQGESASVKLEGKSNICIKCNKDFSTKTNLMRHMSTHDGVKPYQCTTCGKGFTQNGSLKQHMFIHTGERPHVCTVCQRGFTQSKSLIFHLRRHTGEKPFTCDECGISFRQKDGLKHHVLKYHSGAPASSDRHVCCVCDRVLASKYSLNVHMRKHAKTDDKKADIGFDSETTQSSSKEETTRSSPPPSASETVQTPAAVEPPAAVELATDVALGTVHLPTGNTGAGLRMKQFQCGKCFKSFHIKRNLLRHLRNHDVSALELHECVDCKIGFDTKRSLKLHRQRDHKDVIPDLNNCEYCNAPFVTVAELSEHIANVHDAIDQNCPHCNEHFKSQKLYYDHLLEHEHMLED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -