Cnem001308.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:15890386-15892775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0007 0.062 13.9 2.7 2 23 228 249 227 249 0.96 2 12 0.002 0.17 12.5 0.2 2 23 253 274 252 274 0.96 3 12 0.01 0.87 10.3 3.2 1 23 289 311 289 311 0.98 4 12 0.00048 0.042 14.4 3.4 1 23 317 340 317 340 0.97 5 12 0.078 6.8 7.5 4.9 2 23 355 375 355 375 0.96 6 12 0.00018 0.015 15.8 1.0 1 23 381 403 381 403 0.94 7 12 0.021 1.8 9.3 4.6 1 23 408 431 408 431 0.96 8 12 1.8e-07 1.5e-05 25.3 1.5 1 23 438 460 438 460 0.99 9 12 3.4e-06 0.0003 21.2 4.6 1 23 466 488 466 488 0.98 10 12 1.5e-07 1.3e-05 25.5 3.0 1 23 494 517 494 517 0.98 11 12 0.00036 0.032 14.8 1.6 1 23 522 544 522 544 0.96 12 12 1.2 1e+02 3.8 0.1 1 23 549 572 549 572 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAACCTCCAGATATAGAAAATGTGGTCATAAAGTTAGAATCAACATTACCAATTTGCAGGGTGTGCTTGGAAGTCTCAATGGAATACATCGAATTTGAAGCGGCCCTCTGCGTTGTTAATGGTCAAGAAATAACGTACTCTGATGGATTCAGAGAAATATCTTCGCCAGTTGGCGATCTACCAAAAAACCTGCCAACAAATTTTTGTGTAAACTGTGCTACTGATTtgcttaacgcataccttttCATGAAACGAGTGGAAAATGCAAATTACATATTAAATAGGGTGAAATCATTCACTGACACGGAGGGTGACCAACTTGCAGACCAAAAGAATGACTGCCTTTCGGAGGTTGATTCTGATGATGAGAATGAGAAAGACGAGTCCACGACAGACCCACTGGAGGAGCATTTCGATAATTTGATTGATCTCGATGATGATCAAAACAGTttgCCAATATCAGAGAATCCTGTAAAAATAGAAGACGAAGATGACTCAGCACCTTTATATCAAGTAAAAGACTTAAACGAATTGGACACAAATGATTACACTCAACAGGAAGATCTGGAAAGTATAATAAATTCGCAAGACTCTCCTACTTTTATTGATAAAGACatagaaacagaaaataaaataatagatGAAGACTTCATGTGTGACGAGGGATCTCAATGGACTTGCAATGAATGTGGGCAAATTTGCAACACAAAGCGAAAGCTAACAGAACATCGTAAAGAGCATTTCCCAGTCAAATGCAAATATTGTGATCGAGTTCTTTCAACGGGTGAACAGCTAGACAGCCATCTATTATATCATCAATATAACAAATTTGTAGTTAATAGAACTGATAGTATGATACATCAGTGcacattttgtgcaaaaaagtGTAAAACAGAGGCTGAATTTGTTGACCATATAAATGTTCACAAAGGTACAAAGCCTTACAAATGTAACGACTGCACAAATGCTTTCCATACAAAGAACAACCTTCGGCTGCATAAATTACGGGTGCATAAAGCTCAGGAAGCGAGAAAAAGAATAGGCAAAGAATTCGAAAAATGCCAGCACTGTAACAAAGACGTAAGAAAATCACATATAGAAAAACACATGGAAGAGCATTCAAAAACTGCAGAATATATCTGCACTGTTTGtggcaaacaatttcaTACGAAATTTGGTCTAAATGCACATTCATTGGCTCATAAGGAGCGTGAATTTATATGCCATATGTGTAATAAAGTCTGTTTAACAGAATTTACCTTAAAGAAACACATACAATACATTCACTTGTCTGATCGTAAAAAGTACCAATGTGAAGACTGTGGCTTGGTTTTTCAGTATCCTTCACATTTAAGGGATCACCAAAGAAAGCATAATGTACACAGCCGATTCCAATGTCCCCATTGTGATAGATCCTACTGTCGAAAGCCACAACTAGACATTCATATGCGATATCACAATAATGATTTTCGATATAAGTGCGATCAGTGTGACAAGTGCTATGTAACTAAAAGCAATTTAATGGATCATATTAGATCAAGCCACACTAAGATTATGTACGATTGTGATAAATGTGATCAGAAATTTAAATCGGTTACCGGACTTAGGAAACATAAATATATTCACACAGGATATCCCTATAATTGTCCACTGTGTAGCGCTGGACAAACAACGCGATCTGggATGAAGGCACATTTGTTTGGAGTTCACAAAGATGCCATCACTGAAGAAGAATTCAATGAAATGTTTCCAATAATTGTTCCAAAAACTGGTTTCCGACGACCGAGACCTCAATTTTCAGATTAA
- Protein Sequence
- MEEPPDIENVVIKLESTLPICRVCLEVSMEYIEFEAALCVVNGQEITYSDGFREISSPVGDLPKNLPTNFCVNCATDLLNAYLFMKRVENANYILNRVKSFTDTEGDQLADQKNDCLSEVDSDDENEKDESTTDPLEEHFDNLIDLDDDQNSLPISENPVKIEDEDDSAPLYQVKDLNELDTNDYTQQEDLESIINSQDSPTFIDKDIETENKIIDEDFMCDEGSQWTCNECGQICNTKRKLTEHRKEHFPVKCKYCDRVLSTGEQLDSHLLYHQYNKFVVNRTDSMIHQCTFCAKKCKTEAEFVDHINVHKGTKPYKCNDCTNAFHTKNNLRLHKLRVHKAQEARKRIGKEFEKCQHCNKDVRKSHIEKHMEEHSKTAEYICTVCGKQFHTKFGLNAHSLAHKEREFICHMCNKVCLTEFTLKKHIQYIHLSDRKKYQCEDCGLVFQYPSHLRDHQRKHNVHSRFQCPHCDRSYCRKPQLDIHMRYHNNDFRYKCDQCDKCYVTKSNLMDHIRSSHTKIMYDCDKCDQKFKSVTGLRKHKYIHTGYPYNCPLCSAGQTTRSGMKAHLFGVHKDAITEEEFNEMFPIIVPKTGFRRPRPQFSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -