Basic Information

Insect: Chalcosyrphus nemorum
Gene Symbol: -
Assembly: GCA_949716465.1
Location: OX454332.1:108164153-108166221[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.3 5.5e+02 1.5 0.4 2 11 7 16 7 19 0.81

2 14 0.071 6.2 7.6 1.4 1 23 181 206 181 206 0.92

3 14 2.5e-05 0.0022 18.5 2.6 1 23 212 234 212 234 0.98

4 14 4.9 4.3e+02 1.8 0.4 2 10 240 248 239 250 0.85

5 14 0.025 2.2 9.1 0.3 2 12 269 279 269 292 0.84

6 14 0.0001 0.009 16.6 4.9 1 23 298 320 298 320 0.98

7 14 1.6e-05 0.0014 19.1 0.1 1 23 326 348 326 348 0.96

8 14 8.7e-06 0.00076 19.9 5.5 3 23 355 375 353 375 0.97

9 14 0.038 3.3 8.5 3.6 2 23 383 405 383 405 0.90

10 14 0.00011 0.0097 16.5 3.3 1 23 431 453 431 453 0.99

11 14 5.2e-06 0.00046 20.6 4.0 1 23 459 482 459 482 0.97

12 14 3.2e-07 2.8e-05 24.5 0.8 1 23 488 511 488 511 0.94

13 14 0.0012 0.1 13.2 1.8 1 23 517 539 517 539 0.97

14 14 2.8e-05 0.0024 18.4 0.2 1 23 545 567 545 567 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.3	5.5e+02	1.5	0.4	2	11	7	16	7	19	0.81
2	14	0.071	6.2	7.6	1.4	1	23	181	206	181	206	0.92
3	14	2.5e-05	0.0022	18.5	2.6	1	23	212	234	212	234	0.98
4	14	4.9	4.3e+02	1.8	0.4	2	10	240	248	239	250	0.85
5	14	0.025	2.2	9.1	0.3	2	12	269	279	269	292	0.84
6	14	0.0001	0.009	16.6	4.9	1	23	298	320	298	320	0.98
7	14	1.6e-05	0.0014	19.1	0.1	1	23	326	348	326	348	0.96
8	14	8.7e-06	0.00076	19.9	5.5	3	23	355	375	353	375	0.97
9	14	0.038	3.3	8.5	3.6	2	23	383	405	383	405	0.90
10	14	0.00011	0.0097	16.5	3.3	1	23	431	453	431	453	0.99
11	14	5.2e-06	0.00046	20.6	4.0	1	23	459	482	459	482	0.97
12	14	3.2e-07	2.8e-05	24.5	0.8	1	23	488	511	488	511	0.94
13	14	0.0012	0.1	13.2	1.8	1	23	517	539	517	539	0.97
14	14	2.8e-05	0.0024	18.4	0.2	1	23	545	567	545	567	0.97

Sequence Information

Coding Sequence: ATGAGTGTCGTGGAGAACACTTGTCGGACGTGTGGAAAAACCTCCGAACAGGAAGATGGCTCAGACCTCCATCCAATGTACACCTCAACAGAGTATTACAATGAGCTAAAAATGATTCTGGAGGAATttgaaatatggaatttaaatATTGCTCAAGGCGATGGTTTGCCTCAAAAGATTTGCTTAACTTGTTTCGACAGTTTCTGTCAAATACACAATTTTCGCATGATATGCCAGGAAGCACAGAGAAATTTCGGCGAGCATTGTACTGGTCTGGATATCATTATCAAATTGGAACCCGAGTTTGGCGATGTCGATGTAGACTTTCCGGAAGATTTTGAGGGTGAACAAACGATTACCGTGCAGGAGCACTACGCATTTCCTGGTGATGAACGATCAAAAGCACCTGATCCGACCCTGGAACAGAGAACATGTGACAAGCTCTTGGAGACTGTCAATTCGGATGAGGAGAGCCGCAAAGAAAGAGATCGACGAGATGAGATTGAGGAAATGAACGCTGTCTTGCCCGAATTCAAGCTGTATCAGTGTGAGTACTGCATGGACGTCGTTAGTTTCGACGATCCTGATCATCTGAATGAGCACTACAATAAGTTGCATGCTACGGATTTGCCGTTTCCATGTCCCAAGTGCGATAAGTGTTTCAATACAAAGGGCAAGCGAAATAGTCACGCCAGAGTTCACTACCGCATTATACAAGAATGTGAGACTTGCGGCAAGAAAGTGCGTGGCGGTAAGCGATATATGGCTCAACACAATGAGATGCATCACATTGAAAAGCCTCGGGAATGCCCAACGTGCGGAAAAAAGTTCAGTCAAATCACATTAAAGCGGTTTAACTATCACATGAGTTGGCATGACGACAGCAAGTTACACAAGTGCAAGTATTGCGAGAAGAAGTTCATACAGATCACGCATTTGGTGGTACACGAGAGAACGCACACCGGTGAGAGTCCGTACCTGTGTACCCAATGCGGAATTGGATTCAAGAATTCTGGTCTATTGAGCAACCACATGGCAATGCATGGAGCAAAGGAATTGGACTGTCCACATTGCCCTAAAAAATTCTATCACAAGCACGGTTTGCGCATTCATATGCAAACGCACGATCCGAATAGGAAAGTACCTCGCTGCGAACCTTGTGATAAAACGTTCCGCTCCACGATGAACCTGCGTTTGCACAATCACAAGAGACATGGAGCACCAGCCACTCCATCcatcttaaatattttacaaaaaagacaGAAGTTGCATGCTGACTTTATAAAACCATACAAGTGCAGCAAATGTGTGCAAGCATTTGTGCTGCATACGCAGCTGATGAAACATATGAAAACTCATGACGAATATCGGCCCCATAAGTGTGATCGCTGCGGAAAATCATTTAAACGTGAAGCTCATCTTAAATTGCATGTCAACTCATTGCATTTGAACAAAAAGCCGCACAAGTGCAGTCTTTGTGGATGGGCCTTTTCGCAAAGAAGCAATCTGAAGGAACACATGGCTGCAAAACATGAGGAAAAGAAAGAACACAAATGCGATGTCTGTGGGCGGGAATTCGCCCTCATCAAGACTCTGAGGACACACAAACTTAAGCACTTAGACAATAAACCATTTGTTTGCACAATATGTAACAAGGGCTTTAGACAGCTGGGCGTGCTTAAAATGCACATTAACGGTCATTTGAAGAAGAATGAAGCTGACGTTGCTGGAGGAGACATTACGGATATTGTAATTGATAAACTAGAATCAACAAACTGA
Protein Sequence: MSVVENTCRTCGKTSEQEDGSDLHPMYTSTEYYNELKMILEEFEIWNLNIAQGDGLPQKICLTCFDSFCQIHNFRMICQEAQRNFGEHCTGLDIIIKLEPEFGDVDVDFPEDFEGEQTITVQEHYAFPGDERSKAPDPTLEQRTCDKLLETVNSDEESRKERDRRDEIEEMNAVLPEFKLYQCEYCMDVVSFDDPDHLNEHYNKLHATDLPFPCPKCDKCFNTKGKRNSHARVHYRIIQECETCGKKVRGGKRYMAQHNEMHHIEKPRECPTCGKKFSQITLKRFNYHMSWHDDSKLHKCKYCEKKFIQITHLVVHERTHTGESPYLCTQCGIGFKNSGLLSNHMAMHGAKELDCPHCPKKFYHKHGLRIHMQTHDPNRKVPRCEPCDKTFRSTMNLRLHNHKRHGAPATPSILNILQKRQKLHADFIKPYKCSKCVQAFVLHTQLMKHMKTHDEYRPHKCDRCGKSFKREAHLKLHVNSLHLNKKPHKCSLCGWAFSQRSNLKEHMAAKHEEKKEHKCDVCGREFALIKTLRTHKLKHLDNKPFVCTICNKGFRQLGVLKMHINGHLKKNEADVAGGDITDIVIDKLESTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542393;
90% Identity: -
80% Identity: -