Cnem010222.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chalcosyrphus nemorum
Gene Symbol
-
Assembly
GCA_949716465.1
Location
OX454333.1:68776023-68789510[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00042 0.037 14.6 0.8 3 23 187 207 185 207 0.97
2 12 3.6e-06 0.00031 21.2 1.1 3 23 215 235 213 235 0.98
3 12 0.031 2.7 8.8 6.6 1 23 241 263 241 263 0.98
4 12 0.0012 0.1 13.2 2.8 1 23 269 291 269 291 0.98
5 12 0.00077 0.067 13.8 1.4 1 23 514 536 514 536 0.98
6 12 1.2e-05 0.0011 19.5 1.5 1 23 542 564 542 564 0.99
7 12 5.1e-06 0.00045 20.7 2.2 1 23 570 592 570 592 0.98
8 12 8.2e-05 0.0071 16.9 0.3 3 23 600 620 598 620 0.97
9 12 9.6e-06 0.00084 19.8 0.9 1 22 626 647 626 650 0.91
10 12 0.0023 0.2 12.3 1.2 1 23 811 833 811 833 0.95
11 12 3.9e-06 0.00034 21.1 0.9 1 23 839 861 839 861 0.99
12 12 0.0018 0.15 12.7 0.6 1 21 867 887 867 887 0.91

Sequence Information

Coding Sequence
ATGTCGAAGGAAGAACTAGCATTGTGCAGAATTTGTAACGATTGCTTCGAAATATCTAATTTACTTGAACTGTTTAGTGTCTATGAAGGCATAAATGAGCAAATAAAGGAGGTTATCGGGGTGGAACTAATAAAACGTGATGATATACCAAATACTATATGCCGTAAATGCAATGCGGATTTTGAAACGGCACAAGAATTCTGGCGGAGGTGCCTTGATTCCAATGCATACTATGAGTCAAAATATCTGGATAGTACCATAAAATTCGAAGACGATTTCAAGCAAGAGGAACTTTCATTGACACCACAGCCGAAGACGGAAGAAGAAACTGAGTACAtgAATGAGGAGCATGTACCTATAGAATTTGAAAACAATCTAGAAAATGACGAATCTGAAAAAAAGGATGATTACAAAGTAGAAAACACAACTAGTAGTAAAACCAAACGtaataaaaaatcgaaaaaaggtagTAGCTCGTGGACTCGGCAACATTCTTACAAACCAAACGATTTGGTTAAACCTCGAAAACCAAGAGAAATAAAGAAAGTGGAAATTATATGTGATATTTGTGGCAACGTCTTCAAACGCAGACATGTTTTTGCGCTACATCTACGAAGGCATAGTAATAATAAACCATACGGTTGCGAGATATGTTCGAGCAGCTTTTATACAAATTCAGAGTTAAAGCGTCATATGAGACGACACACTGGGGAAAAGCCATACGAATGTCAATATTGCCATCGAAAATTTTCAGATTACGGAACACATTTAAAACATGAAAGaaCCCATACAAATGAtcgtcctttttcttgtaaCCAATGCgataaaactttttcttgtgcGTTTGTATTGAAAAACCACATGTTGGTTCATACAGGAGAAAGGGCTTTTAGGTTCGAAACAATAACAACTGAACAAGCTCAATGTAGAATTTGTTTGGAGGCCGCTGAATCTATGATTTCCATGTTCGAAGATTCCACCATCCCATACAAACTCGAACTGTGTTGTGGCGTGCAGatTTTAAACATTGCAACTCTACCTTCGCAGATGTGCAAAAAGTGTTCTGATATTTTAAATGTAGCTTACGATTTCCGAGTACTATGCCAAAGGTCCCAAGAATATCTGAGTGACCAACAGTTTATTGGCGACGATGACGAAAGTAAGCCAAATCTAAACGAAATAGATTTGGAACAATTTGGCGATTTCGATGGTAATATTGTATTCGTTCaagtagaagaaaaattcaaaaagcaaACTGAAGGCACACCAGAAGTAGTAGATGAGGAATATACTGAAGTGGTTCATAAAAAAGAGCGTCAAGATGCAATGCAAGTGGAACAAAGTGAAGAAGAAGCAGATGAAAAAGAGTACACACAAACTGACGACGAAGAGAAGCAGGACGAACAAACTGAAGATGTGGACGAGGACGATAATCATACTGACGACAAAGACTACGAGCCTCCATTAAAAAAGCAGAGAAAACAACAAGGACGATATTTCCAAGCGAGAGCTCCTAAAAAGCCCAAGCCACCTGTCACTTTTATGTGCAATATATGCGGTAACTTATACAAGAATAAGGCAACATTTAATTATCATATGAAACTGCATAGAAACGATAAGAAATATGAATGCGAgaTTTGTTCGAAACGGTTTATGCAAACTTGTGAACTTCGCGCGCACATTAGGGTACATACAGGTGAAAAGCCATTCAACTGTTCTTACTGCGATCGCAAATTCCGAGATCGAAGCGGAGTTACACGACACGAAAGAACACATACGAATGAACGACCTTTTGGCTGTACAATATGCGGAGCTAACTTTTCATATTCAGCAACGCTAAAGAAACACGAAAAAGTACACACAGGCGAAAAACCCTACAAATGCTCGATATGCGATAAACAATTTTCCGAAGCACATCAACTGAAGGCGCATTTAGGTACAATTAGACATAGGGAGATGGCCAatggaaaaaCTTACGATTTCCGAGTACTATGCCAAAGGTCCCAAGAATATCTGAGTGACCAACAGTTTATTGGCGACGATGACGAAAGTAAGCCAAATCTAAACGAAATAGATTTGGAACAATTTGGCGATTTCGATGGTAATATTGTATTCGTTCaagtagaagaaaaattcaaaaagcaaACTGAAGGCACACCAGAAGTAGTAGATGAGGAATATACTGAAGTGGTTCATAAAAAAGAGCGTCAAGATGCAATGCAAGTGGAACAAAGTGAAGAAGAAGCAGATGAAAAAGAGTACACACAAACTGACGACGAAGAGAAGCAGGACGAACAAACTGAAGATGTGGACGAGGACGATAATCATACTGACGACAAAGACTACGAGCCTCCATTAAAAAAGCAGAGAAAACAACAAGGACGATATTTCCAAGCGAGAGCTCCTAAAAAGCCCAAGCCACCTGCCACTTTTTTGTGCAATATATGCGGTAACTTATACAAGAACAAGGCAACATTTAATTATCATATGAAACTGCATAGAAACGATAAGAAATATGAATGCGAgaTTTGTCCGAAACGGTTTATGCAAACTTGTGAACTACGCGCGCACATTAGGGTACATACAGGTGAAAAGCCATTCAACTGTTCTTACTGCGATCGCAAATTCCGAGATCGGAGCGGAGTTACAGGACACGAAAGGTAA
Protein Sequence
MSKEELALCRICNDCFEISNLLELFSVYEGINEQIKEVIGVELIKRDDIPNTICRKCNADFETAQEFWRRCLDSNAYYESKYLDSTIKFEDDFKQEELSLTPQPKTEEETEYMNEEHVPIEFENNLENDESEKKDDYKVENTTSSKTKRNKKSKKGSSSWTRQHSYKPNDLVKPRKPREIKKVEIICDICGNVFKRRHVFALHLRRHSNNKPYGCEICSSSFYTNSELKRHMRRHTGEKPYECQYCHRKFSDYGTHLKHERTHTNDRPFSCNQCDKTFSCAFVLKNHMLVHTGERAFRFETITTEQAQCRICLEAAESMISMFEDSTIPYKLELCCGVQILNIATLPSQMCKKCSDILNVAYDFRVLCQRSQEYLSDQQFIGDDDESKPNLNEIDLEQFGDFDGNIVFVQVEEKFKKQTEGTPEVVDEEYTEVVHKKERQDAMQVEQSEEEADEKEYTQTDDEEKQDEQTEDVDEDDNHTDDKDYEPPLKKQRKQQGRYFQARAPKKPKPPVTFMCNICGNLYKNKATFNYHMKLHRNDKKYECEICSKRFMQTCELRAHIRVHTGEKPFNCSYCDRKFRDRSGVTRHERTHTNERPFGCTICGANFSYSATLKKHEKVHTGEKPYKCSICDKQFSEAHQLKAHLGTIRHREMANGKTYDFRVLCQRSQEYLSDQQFIGDDDESKPNLNEIDLEQFGDFDGNIVFVQVEEKFKKQTEGTPEVVDEEYTEVVHKKERQDAMQVEQSEEEADEKEYTQTDDEEKQDEQTEDVDEDDNHTDDKDYEPPLKKQRKQQGRYFQARAPKKPKPPATFLCNICGNLYKNKATFNYHMKLHRNDKKYECEICPKRFMQTCELRAHIRVHTGEKPFNCSYCDRKFRDRSGVTGHER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-