Basic Information

Insect: Chalcosyrphus nemorum
Gene Symbol: -
Assembly: GCA_949716465.1
Location: OX454333.1:76622538-76624671[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0053 0.47 11.2 1.2 2 23 134 155 133 155 0.97

2 10 0.036 3.1 8.6 2.4 1 23 237 260 237 260 0.92

3 10 3.6 3.2e+02 2.3 1.6 2 21 268 287 267 288 0.78

4 10 1e-06 8.9e-05 22.9 4.0 1 23 337 359 337 359 0.96

5 10 2.1e-08 1.9e-06 28.2 1.6 1 23 366 388 366 388 0.99

6 10 8.4e-08 7.3e-06 26.3 1.2 3 23 403 423 402 423 0.99

7 10 2e-06 0.00017 22.0 0.4 1 23 429 451 429 451 0.99

8 10 3.8e-07 3.3e-05 24.2 0.2 1 23 457 479 457 479 0.98

9 10 7.9e-07 6.9e-05 23.2 0.3 1 23 483 505 483 505 0.98

10 10 0.15 13 6.6 0.8 3 20 513 530 511 535 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0053	0.47	11.2	1.2	2	23	134	155	133	155	0.97
2	10	0.036	3.1	8.6	2.4	1	23	237	260	237	260	0.92
3	10	3.6	3.2e+02	2.3	1.6	2	21	268	287	267	288	0.78
4	10	1e-06	8.9e-05	22.9	4.0	1	23	337	359	337	359	0.96
5	10	2.1e-08	1.9e-06	28.2	1.6	1	23	366	388	366	388	0.99
6	10	8.4e-08	7.3e-06	26.3	1.2	3	23	403	423	402	423	0.99
7	10	2e-06	0.00017	22.0	0.4	1	23	429	451	429	451	0.99
8	10	3.8e-07	3.3e-05	24.2	0.2	1	23	457	479	457	479	0.98
9	10	7.9e-07	6.9e-05	23.2	0.3	1	23	483	505	483	505	0.98
10	10	0.15	13	6.6	0.8	3	20	513	530	511	535	0.82

Sequence Information

Coding Sequence: ATGAGAAGCTCCGAGGACGAAGTTTCGGAAGAGAATGGTACTGTCTATCGTCCTCTTCTATTAAATATACTGTATAACTTGCACTCTGTTCTAGAAATTGATACCCAGAATTCCCAAGATGAAGAAGACTCCTCACCGAGCGATGAATGCGAAGATGACGACAAACCTATGACCAGAACTCGAAGCGGGACCTATCGCAAGAATCTACGCAGagtgaaaacaaaaagaaaatctagaACTAAGGTTAAGGCACCAGTAAAAgtcaaaaaatcaaagaaagacCTTCCAAAAGAAAGTACACTAGAAGGCAATGACGACCTGGAGGAGATCATAGTACAACCAGACATAAAATCGGACATCGAGGAGGACGAGTGCATCCCAAATGGTTGTAAATCCATAGAATGCTTTATTTGTAGCTGTAGGTTAAGTAAAATCTACAATTTGCGCATTCACATGGCCACACATACAGACGAGGAATCATTCGAGAAAGAAGCCTTTGAAAACTCGGAAATATTCAATGTGCTGAATCCGCACAAGAGGAACATCGATTCAAATATAATTAGGAACTTCGTAATACAGgaAATCAAAGCTAAGCGTTACTCTCAGTTCTATTGTATCCTGAACGAGGCAGCTATTGAATTACATATTAGTGATTCTGAAACTGATTCTGACAGTGGAGGAGCGACTGATCTTATTCCCCATAACAACTACCGCTGTGAGCTGTGTAAGAAGAACTTCGATCGCCGCTATAAGGCCCTCTTTCATCAGAAGACCGCGCACGTAAAGACAGACTTTGCCGTTGAGTGCGATTACTGTATGAAAAAATTTGTCTGCATGAATCTTCTCATCCACCATTTGAAAACTCAGTGTGAGAGTGATGAGAAACCAGTGTCTTGTACTGAGCGCTTCATGAAATTCCTTCTGAAGGCTAATCTCGATCATTATGCGAATTTAGCTCAAGCGAGAGAGCAAAGAAAGCTCCGCAAACTGACTGAAGCCCCCAAAACATACACTTGTAAGACATGCAATAAGACATTCACTCGACAGGAACACCTCAATCGGCATAGTGCCGTGCACTTGCCCGATGAAATGAAGTTCGAGTGTCCAATTTGCGATCGACGGTTTAATAGAAAAGACAACATGCGTTCGCATATGAAAACCCACACCGAGGAGGGTGCACGCAATGCTGAATCACGTAAGATTCTATGCTCCTACTGCGGACGGAGTTTTAGTAGCAAATCGAATTACGTAGTACATATGCGCCGTCACACTGGTGAGAAGCCTTACAAATGCGATGTCTGCGGGAAGGGCTTCCCAAAGTCAACTGATTTAAATTCGCACAAGATCACTCACACGGGGGAAAAGAATTTCGTTTGTACGATCTGTAATAAGGCGTTTGCTAGATCAGCTGTGCTTTCGAAGCACATGCGAGTGCATACTGGTCCATATCCGTGCACATTTTGTCAGAAGATATTCACAAAACCCAGTGCCTTGACTGTTCACTTGCGGGTGCACACTGGTGGTCGATTGTGTGTGTGCATTGTATGCAATAGATCGTTTGACACGAAGAATGAATTGGACGAGCACTTTGCGTCTACAGGCCATAATAATGAGCCCAAACGGATTATAGTAATCAAAGAACCAATTCCGGTGGAGGTAAAACCCATGAAGGAAGATCGCCCAGAGCCAATTCAACCGCCACCATTGACACAAGAACCGACTATAAtggaagtaaaaacaaatgacGATCCACTGGAGATTAAGGAAGAAGAATGGCGAACGACAAAAGTTAAAGTGCCTGTGAACGAAGCAATTCAAAGTGTCCTGCAGAGATCCACTAATGCAGCTACCCCAGAGGTAGTGGAAAACTCTAACATTGGACCGCAAGTAGAAGCAGCTCAGGAGAATGACAGTATAATGTCGGCGTTTTCACCATTAGATGCTGGATACGGTGATGATATGCAGTACAGCGACTGGTAA
Protein Sequence: MRSSEDEVSEENGTVYRPLLLNILYNLHSVLEIDTQNSQDEEDSSPSDECEDDDKPMTRTRSGTYRKNLRRVKTKRKSRTKVKAPVKVKKSKKDLPKESTLEGNDDLEEIIVQPDIKSDIEEDECIPNGCKSIECFICSCRLSKIYNLRIHMATHTDEESFEKEAFENSEIFNVLNPHKRNIDSNIIRNFVIQEIKAKRYSQFYCILNEAAIELHISDSETDSDSGGATDLIPHNNYRCELCKKNFDRRYKALFHQKTAHVKTDFAVECDYCMKKFVCMNLLIHHLKTQCESDEKPVSCTERFMKFLLKANLDHYANLAQAREQRKLRKLTEAPKTYTCKTCNKTFTRQEHLNRHSAVHLPDEMKFECPICDRRFNRKDNMRSHMKTHTEEGARNAESRKILCSYCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHTGEKNFVCTICNKAFARSAVLSKHMRVHTGPYPCTFCQKIFTKPSALTVHLRVHTGGRLCVCIVCNRSFDTKNELDEHFASTGHNNEPKRIIVIKEPIPVEVKPMKEDRPEPIQPPPLTQEPTIMEVKTNDDPLEIKEEEWRTTKVKVPVNEAIQSVLQRSTNAATPEVVENSNIGPQVEAAQENDSIMSAFSPLDAGYGDDMQYSDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542385;
90% Identity: -
80% Identity: -