Cnem007381.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- su(Hw)
- Assembly
- GCA_949716465.1
- Location
- OX454333.1:20831156-20836198[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00012 0.011 16.3 1.8 1 21 401 421 401 422 0.94 2 13 1.9e-05 0.0017 18.9 0.4 3 23 473 494 471 494 0.92 3 13 0.37 32 5.4 0.1 1 23 500 522 500 522 0.94 4 13 0.00011 0.0099 16.4 6.4 1 21 529 549 529 550 0.94 5 13 2.8e-05 0.0024 18.4 0.9 2 23 562 583 561 583 0.97 6 13 0.00022 0.019 15.5 6.2 1 23 594 616 594 616 0.99 7 13 1.9e-05 0.0017 18.9 1.1 1 23 622 644 622 644 0.97 8 13 2.2e-05 0.0019 18.7 0.6 1 23 650 672 650 672 0.99 9 13 1.6e-06 0.00014 22.2 4.9 1 23 678 700 678 700 0.98 10 13 7.1e-05 0.0062 17.1 2.0 1 23 704 726 704 726 0.97 11 13 0.0011 0.093 13.4 0.2 3 22 738 757 737 760 0.89 12 13 0.03 2.6 8.8 1.1 2 23 767 789 767 789 0.95 13 13 0.0012 0.11 13.2 6.2 2 23 796 818 795 818 0.97
Sequence Information
- Coding Sequence
- ATGAGGTTCCGAGCCCTAATGCATGATCAACAGGACATGAAGGATTTTCTAAATATAATCCTAACGCTTTCCAAACTCACTAAGTACTGCGTTATGAATATAAGCCCGCAAACAATAGATTTCATTGTAAATGAAGACTCGGGTAGCGCGGCACCCTTGGTGTGGGCAGAAATCTTAACCGATACATTTTTTGCCGAGTATTCAATGGAAGGAATCAACAaaacatataaacaaataatgcTCTCCTTCAATCCGACACACTTAGCAACCGCTATATCAGTTCTACGGAATAATGCTAAATATTGCAAGATTAAGCTAACAAATGTCCAATATCCGTGTCTAACAATCGAAATGAAAGTACCATCGAATGTACCGGATCAATATCGACAAATTGTACACGATGTACCAGTAACTGTTATACCAagagtcgattggagcaccttctTACTGCCACAAGTtccgaaattgaaaattttccttGAGCTTTCATCAAATCGAGCAATACGAAGTCACattgataaattgaaaaatctcTCGCCATCAATCACATTTTATGCTACAAGCAATGGCGAATTAAATGTAGCAACAGAAACGGAATTGTCTACTGTTACCATAAGACATAGAAACTTACTCGTTCGAGAAGTTAATGCTGAGGCAAGAGAAAATGAAAGTCAGGTTGATGCTTCGTGCAATGTCGATTGTAAGAAGTTGGCCGTGTTCTTTTCGTCCCTGCAGATGGCTACATTGCGCTGGTCATGTGGCATATTAGATGACAAATTAATTTACTTTGAATTAGACGTTAAAAGGGGGGTAAGAGTGCATTCCATTATACCAGCCGTTTGCGGAGAACCGCAggCTTCTAGGCCAAAAAGAAACTTACCTTCGGATCCCAGTAGTAGCAGTGCATTACTGCATAACACCAAGAGAATCCTCCGGCCATCAAAGGTGTTAAAAAAGAGCGAAACTAATACAAACGTGGAAGTTGTGGATGTAGATGCATCAGAACCAACTGATCACTATCTTCTAACAGAGATTAAAGGCGACGAAGATGAGAACgagattgattttgttttaacagaGAAACGTTTCGCTGGTGACGGTACTCAACCGGCGGAGTGTCGGGAGGAAATCGAGAACTGGGAAGAAGGTGATGATGCCGACGACGATGAGAGTACAACGACCACCAAGGAAATTGTCGAACATGTGTGCGGCAAGTGTTACAAATCTTTCCGTACAATAAAGTCTCTAAAACGTCACATGGAATACTGTATCTTCAATAGCGAAATGGTATTGCGAAGAGCAGAAATGCAAAATAACATAGAAAAGATCGAAAAAGAAGCTGTCATTATGGAAAAGAAAGATATTTGCTTCTGTTGTGGCGACAGCTATGATACGTGTCACTCGGGTCACATAAATTGTACCGAATGTCCAAAGACGTTCAAAACTCAGCTTAGCCTGGAGCGGCATATTTTCCTCATCCATTCGGAGcatagtgattttccctgtgaCGTGTGCAACGGACGCATTCGAACAGAATCATTGCTGGCATTGCATAAGGATCAGCATAAGAACCGCGGTAAACCATTTGCGTGTAAACAATGTGGAAAGGATTTTACACGACACTACCACTTGAAGCGACATCATAAGTATTCGATGTGTGGTGAAGGTAAAGCTGAAATGATGAAGTGTAAAGTTTGTGCAAAGGAATTCTATAGATTGGATAACTTGCGGGTACACTTAAAGTCACATTTGGGTCAGGGAACACCAAAGAAACAAGAGTACACATGCCCTTGCTGTAAGAAATGCTTTTACAGTTTGTCGACATTGAAtATTCATATACGGACTCATACGGGTGAGAGGCCTTTTGACTGCGATCTTTGTGACAAGAACTTCCCATCGTTGGTGTCGTTGAAGAAGCACCGGAGGTATCATACGGGCGAGAAACCGTACACTTGTGAAATTTGCCAACAAAACTTTGCTGTGAAGGAGGTTCTTAACAGACATATGAAACGGCATACCGGCCAGAAGCCACACGTTTGTACTCATTGTGATAAACGTTTTATTCAAGCCACGCAGTTGAAGAATCACTTGCGAACGCATGAACGACCGTATGAATGTACTATTTGTCCGGAAAAgtttaaaactgaaaaacaATTCGAGAAGCACTTTAAATTGCACACGAAAAAGGCAAGTATGGGTGTTAAGCCCAATTGCCCAGACTGCAAGATGGTATTCAGTGGCCAAACAGCTTTATTGAGACACGAAAAATCTGCTAAACACTTGGAATCGTGTAAAAGATCTTGTGACCAATGCGGAGAAATCTGTGCAAATAAGAAATCACTGGAATTCCATATGCTTAAAGTACACGAAACCATCAGCGATAACAAGTGTGGTCACTGCAGCAGGACCTTTGTCCAGTTTCATCTGTTAGAACATCACATCAAAACCGAACACAATAATTCTATCGATTCCAAAGGTGTCCCGGTAAAAGAAGCTGAAGTGAATCCAGTCAAGAAAGAAACCGAAGAGAgttgttttattattgaagAGTTTATTGTTGAGTCGCTCCCACCAGAAACAGAAGTCCCAGGCGGATCAGTACAAGACTTTACTATTATTGCAAAAGATAATGAGGTATCACCAGAGTTTGCCAAGACCAAGCAAGTTATAAACACGAAATCACCAGATCTAAGAGCCGAGTTGAAAAGGTCTCTGGCGAATTGTCTTCAAGATGATTCGTCCAAAAAGGCGGCCGACAAAAAGCCAACCATGAGCGAAGAGGATGTGGAAATATCGGACAAAGTTGGTAAATTACTCGATATGCTGGTGGATGTTGAGACGCTTGTAAAATTTGGCTGGCCGGATAATCCTGTTGAACAAGTTCTCTGTAAAGTGATTGAAAACTGTGGCTATAACCTGTGCAAGTCAAAATTCACTGATGATTATGGCACAAGGATGCGAGAGTTTGTGAAGCTATTGTTTACAGTAGTCATCCAGAACGAATCAATCAAGGAactattgaataatttttcaatCGATGAAGTCATTGACTATGTTCtttcaaatgatgatgatgattag
- Protein Sequence
- MRFRALMHDQQDMKDFLNIILTLSKLTKYCVMNISPQTIDFIVNEDSGSAAPLVWAEILTDTFFAEYSMEGINKTYKQIMLSFNPTHLATAISVLRNNAKYCKIKLTNVQYPCLTIEMKVPSNVPDQYRQIVHDVPVTVIPRVDWSTFLLPQVPKLKIFLELSSNRAIRSHIDKLKNLSPSITFYATSNGELNVATETELSTVTIRHRNLLVREVNAEARENESQVDASCNVDCKKLAVFFSSLQMATLRWSCGILDDKLIYFELDVKRGVRVHSIIPAVCGEPQASRPKRNLPSDPSSSSALLHNTKRILRPSKVLKKSETNTNVEVVDVDASEPTDHYLLTEIKGDEDENEIDFVLTEKRFAGDGTQPAECREEIENWEEGDDADDDESTTTTKEIVEHVCGKCYKSFRTIKSLKRHMEYCIFNSEMVLRRAEMQNNIEKIEKEAVIMEKKDICFCCGDSYDTCHSGHINCTECPKTFKTQLSLERHIFLIHSEHSDFPCDVCNGRIRTESLLALHKDQHKNRGKPFACKQCGKDFTRHYHLKRHHKYSMCGEGKAEMMKCKVCAKEFYRLDNLRVHLKSHLGQGTPKKQEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCDKNFPSLVSLKKHRRYHTGEKPYTCEICQQNFAVKEVLNRHMKRHTGQKPHVCTHCDKRFIQATQLKNHLRTHERPYECTICPEKFKTEKQFEKHFKLHTKKASMGVKPNCPDCKMVFSGQTALLRHEKSAKHLESCKRSCDQCGEICANKKSLEFHMLKVHETISDNKCGHCSRTFVQFHLLEHHIKTEHNNSIDSKGVPVKEAEVNPVKKETEESCFIIEEFIVESLPPETEVPGGSVQDFTIIAKDNEVSPEFAKTKQVINTKSPDLRAELKRSLANCLQDDSSKKAADKKPTMSEEDVEISDKVGKLLDMLVDVETLVKFGWPDNPVEQVLCKVIENCGYNLCKSKFTDDYGTRMREFVKLLFTVVIQNESIKELLNNFSIDEVIDYVLSNDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -