Cnem002302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chalcosyrphus nemorum
Gene Symbol
-
Assembly
GCA_949716465.1
Location
OX454332.1:34682556-34684432[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 6.8e-07 5.9e-05 23.4 1.7 1 23 187 209 187 209 0.99
2 10 0.00012 0.01 16.4 6.9 1 23 215 237 215 237 0.98
3 10 5.5e-06 0.00048 20.6 3.9 3 23 251 271 249 271 0.95
4 10 0.0014 0.12 13.0 1.3 1 21 277 297 277 299 0.95
5 10 4.9e-06 0.00043 20.7 7.0 1 23 305 327 305 327 0.98
6 10 1.7e-08 1.4e-06 28.5 1.3 1 23 333 355 333 355 0.99
7 10 1.8e-06 0.00015 22.1 0.4 3 23 363 383 362 383 0.98
8 10 0.05 4.4 8.1 0.3 1 23 389 413 389 413 0.94
9 10 1.4e-05 0.0012 19.3 2.4 1 23 419 441 419 441 0.98
10 10 3.3e-05 0.0029 18.1 1.2 1 23 447 470 447 470 0.96

Sequence Information

Coding Sequence
ATGCAAAACTGCCAACAAACATACGAAATTAACAAAATCTGTCGGTGTTGTCTAAAAGCAGTTGGCAAGATGAGACCTCTGTACGGCTACTTTTTAGACGAAATGTTGCGCTCTGTTGCCAGTGTACAGATGGAACCTAATGACGGGCTTCCAGAGCTTCTGTGTTTCCAGTGCGTTTTACAATTGAGCACCGCATTTCGTTTCAGAGAACAATGCCGAAAGTCGAACACGGTAATCCGAGAGTACATCGAAACCAATAAGAAAAGGTCATTCCAAAATTCAACTGTGGGCGCGAATAATGAAGACCATAAACATTTGGAGATGATAGATCCCGACGATCGTGACAGTTGTTCATTTGTGAACGACATTGGAGATATGGATACTCTAGATCAAGAGGACACATTACAAGTACATGAAAGTACTGAAACTGTGAGTATAGAAATGTTACACGTTTGGTGGTCTACAAAGCGGTTAGGAAATGAAGCCTCAAGTTTTTGTTCATGTCCTGCAATCGACAGTAAACCTCTTTTATCAGATGTAACACGCACAAACACTGAATTCAAATGTGAAATATGCGGCAAAGAATTTTCAACTAGAAAGCAAATAGTTCGTCACACCAAAACCCATGAAGAAAACAAGCTCTACAAATGCTCAAAATGTGATAAATCCTTTGCAGAAATGTGCAACTTGAAGAAGCATTTGCATAGACACACTGGCGATTTAAGGAATTCCACGGAAAAACCTCACTTGTGCTCTATTTGTGgAAAGAACTTCAAATATCGCAGCTCTCTATCCAAGCATATGAACTTCCACACGAGAAAAAAGCTTTTCAATTGTCCTCAATGCCCAAAATATTACGTAGAGATGTCTGCACTCAAAATCCACATGAGATGTCATACAGGAGACAGTCCGTATATCTGCCACCAGTGTAATCGCCGCTTCACTCAAGCATGTAATCTAAAAAAGCATTTGAGATCTCATAGCGGAGAGCGAACATTTAAATGTCCCAATTGCGATAGAACCTTTGTTCAACGTGATTACCTTACAAGACACATGGAGACTCACTGTCCAGAAAAAAAAGCTCTCTGCAGTATATGCGGCAAACGTTTTGCTAACGCCAAGACTTTAAAAGTCCACCAACAAATACATACCGGCAGTCGGTCATATGCTTGCGGATAtgaaaattgcaacaaaaaattCCTTCGGCTAGATGCAGTTTTGATTCATCGACGGACACATTCGGGTGAGAAACCATACTCTTGTGATAACTGCACCCACTCGTTTGCAACTTCGACGCAACTTTCCAATCATTTGCGAATACATACGGGTATAAAACCTTTCGTATGTGAAATTTGTTCAAAGAAGTTTGCCAGCAAAAACAGCCTATCGgcTCATTCCAAAAAGTATCACAGTGAACTCAATAATCAACAACTAACGAATTGTTTCACTGATCAAGGATCAGTACAAGATGAAGCTTCTGATCATAACGTAGAAACGATTATGGAACAAATGTTTGAAGAGTCAGTACtactatttaaaataaatgagaacGGAGAATTAGTTCCAGATCCAGAATCTACTTCTATCACTGGAATTTCAACTATAAACTAA
Protein Sequence
MQNCQQTYEINKICRCCLKAVGKMRPLYGYFLDEMLRSVASVQMEPNDGLPELLCFQCVLQLSTAFRFREQCRKSNTVIREYIETNKKRSFQNSTVGANNEDHKHLEMIDPDDRDSCSFVNDIGDMDTLDQEDTLQVHESTETVSIEMLHVWWSTKRLGNEASSFCSCPAIDSKPLLSDVTRTNTEFKCEICGKEFSTRKQIVRHTKTHEENKLYKCSKCDKSFAEMCNLKKHLHRHTGDLRNSTEKPHLCSICGKNFKYRSSLSKHMNFHTRKKLFNCPQCPKYYVEMSALKIHMRCHTGDSPYICHQCNRRFTQACNLKKHLRSHSGERTFKCPNCDRTFVQRDYLTRHMETHCPEKKALCSICGKRFANAKTLKVHQQIHTGSRSYACGYENCNKKFLRLDAVLIHRRTHSGEKPYSCDNCTHSFATSTQLSNHLRIHTGIKPFVCEICSKKFASKNSLSAHSKKYHSELNNQQLTNCFTDQGSVQDEASDHNVETIMEQMFEESVLLFKINENGELVPDPESTSITGISTIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-