Basic Information

Insect: Chalcosyrphus nemorum
Gene Symbol: -
Assembly: GCA_949716465.1
Location: OX454332.1:90923882-90935738[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 1.3 1.1e+02 3.6 0.0 2 23 227 249 226 249 0.90

2 26 1.3 1.2e+02 3.6 0.0 6 23 258 275 258 275 0.97

3 26 1.1e-05 0.001 19.6 0.7 1 23 281 303 281 303 0.99

4 26 0.0039 0.34 11.6 4.9 1 23 309 331 309 331 0.97

5 26 0.0051 0.45 11.2 0.6 1 19 337 355 337 360 0.90

6 26 0.00014 0.012 16.2 0.3 3 23 368 388 367 388 0.96

7 26 0.00066 0.058 14.0 0.3 2 23 397 419 396 419 0.96

8 26 0.00071 0.062 13.9 0.6 1 23 426 449 426 449 0.94

9 26 0.0045 0.4 11.4 0.1 1 17 455 471 455 472 0.88

10 26 3.1 2.7e+02 2.5 0.1 2 19 904 921 903 922 0.91

11 26 4.4 3.8e+02 2.0 3.1 2 23 1147 1169 1146 1169 0.94

12 26 0.32 28 5.6 3.7 6 23 1178 1195 1176 1195 0.98

13 26 5.7e-06 0.0005 20.5 5.6 1 23 1201 1223 1201 1223 0.99

14 26 2.1e-05 0.0018 18.8 0.3 1 23 1230 1252 1230 1252 0.97

15 26 0.00019 0.017 15.7 0.2 2 23 1258 1280 1257 1280 0.95

16 26 0.6 53 4.7 0.9 2 23 1289 1310 1288 1310 0.94

17 26 0.00014 0.012 16.2 2.1 1 23 1317 1340 1317 1340 0.96

18 26 0.57 50 4.8 0.2 1 11 1346 1356 1346 1362 0.92

19 26 1.5 1.3e+02 3.4 0.7 2 23 1562 1584 1561 1584 0.95

20 26 0.27 23 5.8 1.2 6 23 1593 1610 1593 1610 0.98

21 26 7.7e-05 0.0067 17.0 3.2 1 23 1616 1638 1616 1638 0.98

22 26 3.5e-05 0.003 18.1 2.4 1 23 1645 1667 1645 1667 0.98

23 26 0.011 0.94 10.2 2.9 1 23 1672 1695 1672 1695 0.96

24 26 1.4 1.2e+02 3.5 0.7 2 20 1704 1722 1703 1726 0.83

25 26 0.00098 0.086 13.5 0.4 1 23 1733 1756 1733 1756 0.96

26 26 0.23 20 6.0 0.2 1 13 1762 1774 1762 1777 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	1.3	1.1e+02	3.6	0.0	2	23	227	249	226	249	0.90
2	26	1.3	1.2e+02	3.6	0.0	6	23	258	275	258	275	0.97
3	26	1.1e-05	0.001	19.6	0.7	1	23	281	303	281	303	0.99
4	26	0.0039	0.34	11.6	4.9	1	23	309	331	309	331	0.97
5	26	0.0051	0.45	11.2	0.6	1	19	337	355	337	360	0.90
6	26	0.00014	0.012	16.2	0.3	3	23	368	388	367	388	0.96
7	26	0.00066	0.058	14.0	0.3	2	23	397	419	396	419	0.96
8	26	0.00071	0.062	13.9	0.6	1	23	426	449	426	449	0.94
9	26	0.0045	0.4	11.4	0.1	1	17	455	471	455	472	0.88
10	26	3.1	2.7e+02	2.5	0.1	2	19	904	921	903	922	0.91
11	26	4.4	3.8e+02	2.0	3.1	2	23	1147	1169	1146	1169	0.94
12	26	0.32	28	5.6	3.7	6	23	1178	1195	1176	1195	0.98
13	26	5.7e-06	0.0005	20.5	5.6	1	23	1201	1223	1201	1223	0.99
14	26	2.1e-05	0.0018	18.8	0.3	1	23	1230	1252	1230	1252	0.97
15	26	0.00019	0.017	15.7	0.2	2	23	1258	1280	1257	1280	0.95
16	26	0.6	53	4.7	0.9	2	23	1289	1310	1288	1310	0.94
17	26	0.00014	0.012	16.2	2.1	1	23	1317	1340	1317	1340	0.96
18	26	0.57	50	4.8	0.2	1	11	1346	1356	1346	1362	0.92
19	26	1.5	1.3e+02	3.4	0.7	2	23	1562	1584	1561	1584	0.95
20	26	0.27	23	5.8	1.2	6	23	1593	1610	1593	1610	0.98
21	26	7.7e-05	0.0067	17.0	3.2	1	23	1616	1638	1616	1638	0.98
22	26	3.5e-05	0.003	18.1	2.4	1	23	1645	1667	1645	1667	0.98
23	26	0.011	0.94	10.2	2.9	1	23	1672	1695	1672	1695	0.96
24	26	1.4	1.2e+02	3.5	0.7	2	20	1704	1722	1703	1726	0.83
25	26	0.00098	0.086	13.5	0.4	1	23	1733	1756	1733	1756	0.96
26	26	0.23	20	6.0	0.2	1	13	1762	1774	1762	1777	0.92

Sequence Information

Coding Sequence: ATGCTGTGCATTTTATGTCTCGAGCCCCCGGAACAAGAACTAAAAATCTTCGATGAGAACTTACTCTATCTTGACATTAGCGGCATAATTTCTAAATATTTCTGGTTCCAGCCAAGTAGCGACGATGATAATGCTCGAGTCATCTGCTGCTCCTGCTGGCAAGCCCTAAAGTCCTTTCACCAATTCTACAAGAAAGTCGAGGAGGCTCACGTTAAGCTGACCAACTTAAAGCAAGCGGGCGGAACTGACTTGAAGGTAGAGGAAGAGGACCCGACTATTAATTACCCAGACGCGTTGTTAGGTATTAAGATTGAAGTCTGCGAAGATACAAAAACCGATCATGTGGGAGTCTTTCCGGAGGCATATATAGATCCTCTAGAAGCGATAGCAAAGACGGAGGTGATACTACACGATACAAAGTCTGAATCAGAGTCAGAAATACCTTTATCACTACTGCTTAGATCTAAGAAACCACCAAAGAGGAAGGGAATACGTCGACTCTGTATTAAAGGTGACGAGCGCTTAAAAAGGAGGAAACGAGTCCGAAAATTGAAAACTCGTAAAGAAAGCAGTGAAGTATCTGGACCATGGCCTCATACTTGTTATATAGATGAGGATGAGACAAAGCGAATATCAACAGAAACATTGGATGAGGTCATCAAACAAAATATGCATCTAGTGTGCGATATTTGCAGTCTCCCGCTGGAGAATTTCTATATGCTTCAGGAGCACTACGAAGGTGTTCACAAAGAGCGTGGTTATGTCGCTTGTTGTGGCAAGAAATTCGATAAGCGCGGAACAATAGTCGATCATATCTTGTGGCACAAGTATCCCGAGTATTTTAAATGCAACAGCTGTCCCAAAGTTCTTGCGAATCGCAAAAACTTGAAGGAACACATGAAAATACATAACAAAAAGCTCGACTATCATTGTGACCAGTGTACCAAATCGTTTCATCGCAAACTTCTGCTCGATCGTCATATGGACATACACGTCTCGGAACGGCGATACAAGTGTGACGAATGTGATAAGCTTTTTGCATCAAAATTCTCACTAGGGCAGCATAATTACGGTGTTCATAAGGGTGGCTATACAAAGATATGCGACCAGTGCGGTAAAGTAACACGGGATCAAGAGGCTTTTCGACGTCACCAGCTGGAACATACTGGTGAACCGAAGCCATTTGTTGAATGTGAAAAGTGTGGCGTAAAGTTGGCTAATAGGCAAGGTCTAACGAGGCACATGAAGTCTCAGCACCCAGAGGTACAAACCAATCATGAGTGCTCTGTTTGTGGCACAGTAACTTCTAGCATTTATGCGCTCAAGAGGCATATAACATATATGCACAAGTATGAGCGATCGCACAAGTGCCCCATGTGTGATAAGGCGTTCAAGAGAGCTCTCACACTCAAGttaaaaatgttttgcaTTCTCTGTGTGACCGCGTCTGATAATATTCTACAAATCTTCGATGAAAACGGGCTGCGCCTTGACATCAGAACCATCATTACTAAGCACTTTTGGCTTCAGCCCAGAGAAGATGACTACAATGCAAAGGTAATATGTTGCAACTGCTGGGACGCTTTAAACACATTTCATAAATTCTACCAAGCCGTTGCTGAAGCCCACGCAAAATTTAACTGTATGAAGCCGAGTTTACAGGACGCCGGAAACACCCACGCAAATTTGGATTACATAAAGCCAACCTTTGAAGAGGTGGTTGAAGGTCGTTCTCAATTGGAATGCATAAAACCGGCGTTTCACGAGTTAGATATTCTTGGTTTGGACGATAAAAGGTCTAGCTTTCAGGAGAAAGTTGAGACTGACAGCTTAAAACAAGTTTCTCCAGAAATAACAAAGCACAACACAAATTTATATGGCTTGCAACCAATATATGAAAAAGTAACAGAGACTAATTTGGAGAATGTGCAATCTATTTACCATGTGATAGACAAAAATAACTCGAGTTTGGGCAACTTAAAACCAACATATCAGCCGTTAGTTCCTAACCAGCCCGTAACTCATTTGGATGCTGTAGAAACCACCTTGAATGGATTGGACAGCATCATAAGAACTAGCTCGCAGGAAGCAGTTCCTGTGAAATTACACACCGTAAAATCGACATACCAGGACGTAGTTAATACCGGCTCTGGCTTGCACAATATGAAACCGAACTATCAGGACCTAGTCCCAGTAAAACTAGACAACGAACTACATTCGACAGTGAAGGACGGATCACAATTCAGTAACTTCGActcgatttttaattttctaactTCGGAAGTCCCATTGGATAAATCTCAAGAGAGTAAAGATGATCCCGAACAAGCCTATGTGCAAGTGCATGTGATACAACAAGTTTCGATTACACCAAATCAAGAAGTACAGTTCAACAATATACAAAGAGAACCGATCGTACTAGAAGAACTATCTTCTGAATCTAATGTTCCAATGGTAAATTTAAGGTCACGAGCGAAATTAAAGGAATATGATCAAACCCGCTCTAATAGTGGGGATAGTGACATCTCAAGAAATGGAAATGAGCACCAGAACGAAACAACGGATGATGACAGTGAAGATGATTCCCAGAATAGCGCAGTGGAAGAAGAAATCAATGCAAATATTAAGAATAATAATATCAACAACACTCCACCTAAGATGGTATCCTGTAGAGAATTCGACAGTATTATTAAGGAGGCCATGGAgttaaaatgcgaaaaatgtaaTGAGCCAGCGTCCAATTTTGCCGTCCTTAAACAACACTATTGGTTATCTCATGAAGAACCTGTTCGTGTTACTTGTTGTGGAAAGCAATATCATAGTCGCGCCGAGTTGCCAAATTCCGAGGACTGTAATGCCAAAGTAATATGTTTCTCTTGCTGGAGTTCATTGGATTCGTTCCATAAATTCTACCAGACCGTTGAGGAAGCTCATATTAACCTGGCAAACATAAAACCTCCCATCAACCATGATACATCGGACGCTGAGAATTTCGATACATACCCTGATTTGTTTGTCAGTGAAGatatgaaatttgagacGCTCGAGGAGCCTGAAGTAGAAATTCCTAGTAACAATATTGAAAATCCagtgaaaaatgaaagaatagAACAAGATGTTAAGTCTGATTGTGACTCTGATATTCCTCTTCTTAAATTGAGtagtcgtaaaaaaaaacttcatgaaGGTAGGCAAATTGCCGTCACAGGAGTCTCAACAAggcagaaaaggaaaataaggaaatcaacagacgatgagagtgaATATAAAGCAccgaaaagcaaaagaaaacaaaggatATCGACAGACGATGAGAGTGAATATAAAGCACCTGAAAGCaaagggaaaagaaaaattaccaatGAAGCTGAAGTCGTTACAACAAATCGAGTTCCCTGTAAGCAGTTCGATAGTTTCATCCAGAAAAATATGAAGTTATCGTGTGAAATTTGCCACGAACCAAAACCCACGTTCATGTGTCTTAAAAAGCACTACCGATCCGTTCACAAAAAAGAATGTTATGTCCACTGCTGTGACAAAAAATTCGAAAGCCGTCACGCTCTTGTCCAGCATCTTATGCTACATCAAAATCCGGATTTCTTCAAATGTAATAAATGCGACAAGGTCTTTAAGCACAGAAAGGCCTTAAGAAGCCACACACAAACCCACGATCAAATAAAACAAGTCTACAAATGCGACGAATGCGGAAGGGGTTTCTCCAATAGATTCGTGCTCGAGAGACATGTGCAAGCACACCTAAAACCACATCTAATCTGTGAGCACTGTGGCATGGTAACGGCTGACAATGGAGCTCTTAAGCGACATCAGCTTAGGGAACACTCAAATGAACCCAGAGTGAAGTTACCATGTACAAAATGTggtgtttttctttacaaagCCGGTTTAAGCCATCATATGAAGAACTTGCATCCAGAAGTAAAAGTAACACATGTTTGTAAAATATGTGGAAAGACATCTCCCACCGAACATGGACTGAGAAGTCATATACGGTATAATCATGAGTGGGGACTGCGGCACAAGTGTCCAATGTGTGAGAAAGGATTCAAGGCAGGATGGAAACTTAGGTCAGATCAAAGAATTCTAATATTTGGCGACGAAGGTCAAAACCTTAACGCCAATCAAGTAATTACCAAGCACTTTTGGCTACAGCCAAGTGCTGAGGATGCTAAcagaaaagaaatttgttgttccTGTTGGAACGTCCTGTATTCGTTTCATAAATTCTACGAAGAGGTGGAAACAGCTCACGCCAAGTTGCTCAATGCCAAACCTCTGATAGATGTCTCTGACCAATTCACGGAACTCAATACTGATTTTTTTAGCGaagATGTAAAGTTGGAAGCCATTGAGGATGCGAAACCAGAATTTATTGAAGTAAATCCTGAACCCGAATCCATTCGCTATAGTACAGAGACTTTAAAAAGTGACCATGATGAATCTGATACAGGCGAAGACTCAACAAAGAATGATGACAGTGATACTGAAAGTGACATGGACTCTTGTAACAACGATGATGCAAAGAACTCAGACGGAGATAGTGActataaaccaaataaaatcaaacCAAAACGAAAGGTTATCCCCAAACTTGACTCAACGTTCAACTATGAAAAGGTTACTTGCAAAGAATTTGATGCTGTCATCAAAAATAACATGGATCTCTCTTGCGAAATTTGTCATCTGCCACTGAACACATTCTTCATCCTCAAAGAACACTATCGGACTGCGCACAAACAAGATGGTTTCGTAAGCTGTTGCGACAAGAAATACTTCAGTCGACATAGCTTGGTCCAACACATATTGCTCCATCGGAATCCCGAGTTTTACAAGTGTAATAAATGTGGGAAAAAACTAGCCAACAAGAAGAGTTTAAAGAACCACAACAAGAGTCACTTGTATAAGGATCGTGTACATGTTTGCAAAAAATGTGGGAAAGGTTTTGGTAAACAGGAGAAGCTTGAGCGTCATGAAAAAACCCATGAGGTACGCGAACATGTTTGCGAACACTGTGGTAAGGTCATGCGTGGCTCTTTTAGCCTAAAGCAACATTATCTGCGGGAGCATTCTGGAATACCAAGACAGCGGGTACAATGCAAGAAGTGTGGCGTTTTTCTTGCGGATAGTTCGAGTTTGAGTTTTCATAATAAATACCAACATCCAAAGGAGGATGTCGAATATAAATGTgacatttgtggaaaaatatcAGTCAGCGGTTACGGGTTAAAACGACACAAACAGTATATGCATGAGTTCGAACGAAAACACAAGTGTACAATGTGCGAGAAGGGCTTCAAGACAGCACAAATTCTTAGGgtacgagtatatgaaCTACAAAAGATTCAATTAATGATCTCAGTACTCTAA
Protein Sequence: MLCILCLEPPEQELKIFDENLLYLDISGIISKYFWFQPSSDDDNARVICCSCWQALKSFHQFYKKVEEAHVKLTNLKQAGGTDLKVEEEDPTINYPDALLGIKIEVCEDTKTDHVGVFPEAYIDPLEAIAKTEVILHDTKSESESEIPLSLLLRSKKPPKRKGIRRLCIKGDERLKRRKRVRKLKTRKESSEVSGPWPHTCYIDEDETKRISTETLDEVIKQNMHLVCDICSLPLENFYMLQEHYEGVHKERGYVACCGKKFDKRGTIVDHILWHKYPEYFKCNSCPKVLANRKNLKEHMKIHNKKLDYHCDQCTKSFHRKLLLDRHMDIHVSERRYKCDECDKLFASKFSLGQHNYGVHKGGYTKICDQCGKVTRDQEAFRRHQLEHTGEPKPFVECEKCGVKLANRQGLTRHMKSQHPEVQTNHECSVCGTVTSSIYALKRHITYMHKYERSHKCPMCDKAFKRALTLKLKMFCILCVTASDNILQIFDENGLRLDIRTIITKHFWLQPREDDYNAKVICCNCWDALNTFHKFYQAVAEAHAKFNCMKPSLQDAGNTHANLDYIKPTFEEVVEGRSQLECIKPAFHELDILGLDDKRSSFQEKVETDSLKQVSPEITKHNTNLYGLQPIYEKVTETNLENVQSIYHVIDKNNSSLGNLKPTYQPLVPNQPVTHLDAVETTLNGLDSIIRTSSQEAVPVKLHTVKSTYQDVVNTGSGLHNMKPNYQDLVPVKLDNELHSTVKDGSQFSNFDSIFNFLTSEVPLDKSQESKDDPEQAYVQVHVIQQVSITPNQEVQFNNIQREPIVLEELSSESNVPMVNLRSRAKLKEYDQTRSNSGDSDISRNGNEHQNETTDDDSEDDSQNSAVEEEINANIKNNNINNTPPKMVSCREFDSIIKEAMELKCEKCNEPASNFAVLKQHYWLSHEEPVRVTCCGKQYHSRAELPNSEDCNAKVICFSCWSSLDSFHKFYQTVEEAHINLANIKPPINHDTSDAENFDTYPDLFVSEDMKFETLEEPEVEIPSNNIENPVKNERIEQDVKSDCDSDIPLLKLSSRKKKLHEGRQIAVTGVSTRQKRKIRKSTDDESEYKAPKSKRKQRISTDDESEYKAPESKGKRKITNEAEVVTTNRVPCKQFDSFIQKNMKLSCEICHEPKPTFMCLKKHYRSVHKKECYVHCCDKKFESRHALVQHLMLHQNPDFFKCNKCDKVFKHRKALRSHTQTHDQIKQVYKCDECGRGFSNRFVLERHVQAHLKPHLICEHCGMVTADNGALKRHQLREHSNEPRVKLPCTKCGVFLYKAGLSHHMKNLHPEVKVTHVCKICGKTSPTEHGLRSHIRYNHEWGLRHKCPMCEKGFKAGWKLRSDQRILIFGDEGQNLNANQVITKHFWLQPSAEDANRKEICCSCWNVLYSFHKFYEEVETAHAKLLNAKPLIDVSDQFTELNTDFFSEDVKLEAIEDAKPEFIEVNPEPESIRYSTETLKSDHDESDTGEDSTKNDDSDTESDMDSCNNDDAKNSDGDSDYKPNKIKPKRKVIPKLDSTFNYEKVTCKEFDAVIKNNMDLSCEICHLPLNTFFILKEHYRTAHKQDGFVSCCDKKYFSRHSLVQHILLHRNPEFYKCNKCGKKLANKKSLKNHNKSHLYKDRVHVCKKCGKGFGKQEKLERHEKTHEVREHVCEHCGKVMRGSFSLKQHYLREHSGIPRQRVQCKKCGVFLADSSSLSFHNKYQHPKEDVEYKCDICGKISVSGYGLKRHKQYMHEFERKHKCTMCEKGFKTAQILRVRVYELQKIQLMISVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -