Basic Information

Insect: Chalcosyrphus nemorum
Gene Symbol: grau
Assembly: GCA_949716465.1
Location: OX454332.1:90917057-90923180[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.042 3.7 8.3 0.2 2 23 321 343 320 343 0.96

2 18 0.041 3.6 8.4 0.1 6 23 352 369 352 369 0.99

3 18 0.0055 0.48 11.1 1.3 1 23 375 397 375 397 0.98

4 18 1.3e-05 0.0012 19.4 1.4 1 23 405 427 405 427 0.99

5 18 2.8e-05 0.0024 18.4 0.3 2 23 434 456 433 456 0.95

6 18 1.3e-06 0.00011 22.6 0.5 3 23 464 484 463 484 0.96

7 18 0.00014 0.013 16.1 0.2 2 23 493 515 492 515 0.95

8 18 0.00058 0.05 14.2 0.1 1 23 522 545 522 545 0.94

9 18 0.0048 0.42 11.3 0.3 1 16 551 566 551 567 0.87

10 18 0.38 33 5.4 0.5 2 23 809 831 808 831 0.94

11 18 1.5e-05 0.0013 19.2 1.6 1 23 863 885 863 885 0.99

12 18 0.00054 0.047 14.3 3.3 1 23 893 915 893 915 0.98

13 18 3.6e-06 0.00031 21.2 0.3 1 23 923 946 923 946 0.96

14 18 0.0015 0.14 12.9 0.3 3 23 954 974 953 974 0.96

15 18 3.6e-05 0.0031 18.0 0.7 2 23 983 1005 982 1005 0.97

16 18 0.00035 0.03 14.9 0.1 1 23 1012 1035 1012 1035 0.94

17 18 9.5e-07 8.3e-05 23.0 1.0 1 23 1041 1063 1041 1063 0.98

18 18 2.4e-05 0.0021 18.6 5.0 1 23 1069 1092 1069 1092 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.042	3.7	8.3	0.2	2	23	321	343	320	343	0.96
2	18	0.041	3.6	8.4	0.1	6	23	352	369	352	369	0.99
3	18	0.0055	0.48	11.1	1.3	1	23	375	397	375	397	0.98
4	18	1.3e-05	0.0012	19.4	1.4	1	23	405	427	405	427	0.99
5	18	2.8e-05	0.0024	18.4	0.3	2	23	434	456	433	456	0.95
6	18	1.3e-06	0.00011	22.6	0.5	3	23	464	484	463	484	0.96
7	18	0.00014	0.013	16.1	0.2	2	23	493	515	492	515	0.95
8	18	0.00058	0.05	14.2	0.1	1	23	522	545	522	545	0.94
9	18	0.0048	0.42	11.3	0.3	1	16	551	566	551	567	0.87
10	18	0.38	33	5.4	0.5	2	23	809	831	808	831	0.94
11	18	1.5e-05	0.0013	19.2	1.6	1	23	863	885	863	885	0.99
12	18	0.00054	0.047	14.3	3.3	1	23	893	915	893	915	0.98
13	18	3.6e-06	0.00031	21.2	0.3	1	23	923	946	923	946	0.96
14	18	0.0015	0.14	12.9	0.3	3	23	954	974	953	974	0.96
15	18	3.6e-05	0.0031	18.0	0.7	2	23	983	1005	982	1005	0.97
16	18	0.00035	0.03	14.9	0.1	1	23	1012	1035	1012	1035	0.94
17	18	9.5e-07	8.3e-05	23.0	1.0	1	23	1041	1063	1041	1063	0.98
18	18	2.4e-05	0.0021	18.6	5.0	1	23	1069	1092	1069	1092	0.98

Sequence Information

Coding Sequence: ATGCTCTGTATTCTCTGTGTTACGATATCCGAGCAAGTTATACAGATATTTCAAGATGAGGGAAGCGCCCTAAATATTAGAGAAATAATCTCAAAGCACTTTTGGCTGCAGCCAAACGCAGACGATGTCAATGCAAAGGTTATTTGCTCGTCCTGTTGGTCGACACTGGATTCATTTCATAAATTCTATCTGCAAATCGAGGAGGCTCATGTTCGATTGCAGGCGGCGGCAATTGACAAAGAGGATTTGAAAGTTGAGAATGAAATCGCACAACATCTTTGTGTTTCTCTCGATCCTGAGCCGTTCGATGTGGTTACACCAGAGTTGCTCGAGGATACAGAAGAAGTTGAGCATATCGTGTGCGTTCAGTTTAAAGTGAAGATAAATGGAATCTTGAGCGTCCGTCAAGGTCGAAAAATCTCTTTAAGCATTGCCCTACAATCAACAGACATCAAACTGGAAGTCCCAGAGGATACCAACGAAGTTAAACTGCCACAAGACGCTGGTCAATGTGAAGCTGCAGAAAAGAAATTCGAATCTCTTAAAGATTCACCTCCTAAACGCAAGCATTCCACTGATTCAAAGAAGTCGGCTGATAATGGATCTGCAACAGCCTCTGCAACGCGTTCTACTAGAAGTCGTACATTGGAAAAAGCCTACACAGCCGATAGCGACTCTTCTAGTGACGATGACGGGGATGTTGGAGCTGAAAGGCCCAATTCACCAGATTGGCAAGATCAAAATTCAGGcaacgacgatgatgacagTGACTACGATGATGGAGCATcaaaagcaaagaaacaaaAGTCTACGACGAAACCAACGAAAAAACGCGGACGACCTAAAAAGGGTGAAGTGAGGAATTCAcctcgaagaaaaaaactcacttcAGAGGAGCACTCAAAGAAAATGGAACGAATTCAGGAATATGACGAAATGATTGCAAAGAACATGAAGCTTTCATGTACAATTTGTTTAGCTGTATTTCCTAATTTCAACATTTTGAAACGGCACTATCGTACCGTACACAACGAATGTGGCTACGCTGTGTGTTGTGGCAAAAAGTTTCGTAAACGCGGTGTCCTTGTCGATCACATTTATACTCATCAGAATCCGGATTATTTTAAGTGTGAAAAGTGCGGACGAGTTCTAGCAAATAGAAAAGGACTGGATTGTCACATGCTAACCCATGACACTGAGAAGCAACGCATTTATCAATGCGACCAGTGTACGTTGAGCTTCTACACTAGACCGCTGCTGACGCGACACTTGCAAACGCATATTTCCGAACGCAATATAAAGTGTCCAGAATGTGACAAATTTTTCTCGACGCAAGACATTTTGCGGACACACATAAACAATGTTCACAATGCAGCTTATACTAGAATCTGCGATCAATGCGGAAAATCTTTCCGCCGTCCAGATGCTTTCCGGCGGCATCAGTTGGAACATGATGGCATAACACAGCCGTTGGTTCCATGTGAGAAATGCGGGGTTAAGTTGACAAGCAAGTACGGTCTTAAACGCCACATGGAATCAATGCATCCCGAGACGGAAATGACTCATATATGCACTACATGCGGTAAGGTCGCACCGAGTGCAGCGGCCTTACAACGGCATATTTCATACATGCACAAAATGGAGCGCAAATACAAGTGTCCCATGTGTGATAAGGCGTTCAAGAAAACCGGAGGTCTTAAGCCGAACAAGAATGATGAGGATGCCAGATTTATCTGTAGCTCATGCTGGGAGGCGCTAGACTCATTTCACAAGTTCTATCTGCAAGTAGAAGAAGCGCATATATCTTTGGTTAAGACAAATACTACAGCGGAAGATGACTTGAAGCAGGAGGACGATCAAGTTGGTCAGACATTGGACGAGGATGTAGGCAAATATGATCCAGAGTGTGCGGAATTTCTGCAAGCAGACGTCAAGCTAGAGGTTAAAGAAGACGGTGACGTTTGCTTGCCACAATACAATCCAATTTCTGATCTTGAGGACAAAATCGATGTCCTGGGAAACATCTCAAAGGCCAAAGAGAAACGTTCGTCCGATTCAAGCGACTCTGAGGACTCTGAATCGGAAATACCACTTGCAAACTTAGCCAAGGCTAAGCCaaacaaaagaagcaaaacaaaagcagCCACATCCAGTAACGACGATTTGGAATCATCCGCTGATTGGCAAGACCATCACTcggtcgatgatgatgatgacgaagacgacgacgacgatgagagtGATTATGAGTCAAAAAAACCCGCACCGAAACGAAAAACCGTTACGAAGACGGGCAAAAAACGAGGTCGGCCATGCAAGAATGCAATAAAGGACGTTACCCCCAAGCAAACCACAGAAGAGCAGATTAAAAAACGAGTCCTTTCGCAGGAGTACGACGAAATCATCCAACAAAACATGAAATTATCTTGCAATGTCTGCCTTTTACCGCTGGCTAACTTCTTCACTTTAAAGAAGCACTACCGCGCCAAGCACAACGAGAGGGGCTATGCTTCTTGTTGTGGCAAAAAATTCCTAAAGCGTGGTATCCTTGTGGATCACATTTACACCCACTTGAATCCGGAACACTTTAAATGCGACAAGTGTGATAAAGTACTGGCCGATAGGCGTTGCCTCGAGGTGCACATGAATACACATGTCACCGAGAAGCAGCGACTCTATCAGTGTGATCAGTGTTTGAAAAGTTTCTTTAAGAAACCACTTCTAACACGCCACCTTCATATTCACATACCCGAGGAGGAACGTAAATTTCCTTGTGAGGAATGCAATAAATTCTTCCCCTCGAACTATACACTACGAGCGCACATTAATAACGTGCACCAAAATGCTTATGCAAAAATCTGCGATCAGTGTGGTAAGTCAATACGCGGACGAGAACAATTCCAAAGGCATTTGCTGGAACATGCTGGTATACCAATACCCAGTGTACAATGTGACAAGTGTGGCGCTAAGTTAAAGAACAAATACGGTCTTAAGAGGCACATGAATTCGATGCATACCGAATCGAATGTGCCGCATGTTTGCAATATGTGTGGCAAAGTAGCACCCAATGCTGCCGCATTACAGCGACACTATTCGTATGTACACAAGTGCGAACGAAATCACAAATGTCCGATGTGCGATAAGGCTTTTAAGAAGGCCGGTGGACTTAAGgAGCACATGACAACGCACACGGGTGAAGTTCTCTATACATGTCCACACTGCCCAAAAACGTTTAACTCCAATGCCAATATGCATTCGCATCGAAAGAAAATGCATCGCAAGGAATGGGAGGAGAACAGGAGGCATCCGCACATGGGTTCTGCTACAACCgctgaataa
Protein Sequence: MLCILCVTISEQVIQIFQDEGSALNIREIISKHFWLQPNADDVNAKVICSSCWSTLDSFHKFYLQIEEAHVRLQAAAIDKEDLKVENEIAQHLCVSLDPEPFDVVTPELLEDTEEVEHIVCVQFKVKINGILSVRQGRKISLSIALQSTDIKLEVPEDTNEVKLPQDAGQCEAAEKKFESLKDSPPKRKHSTDSKKSADNGSATASATRSTRSRTLEKAYTADSDSSSDDDGDVGAERPNSPDWQDQNSGNDDDDSDYDDGASKAKKQKSTTKPTKKRGRPKKGEVRNSPRRKKLTSEEHSKKMERIQEYDEMIAKNMKLSCTICLAVFPNFNILKRHYRTVHNECGYAVCCGKKFRKRGVLVDHIYTHQNPDYFKCEKCGRVLANRKGLDCHMLTHDTEKQRIYQCDQCTLSFYTRPLLTRHLQTHISERNIKCPECDKFFSTQDILRTHINNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGITQPLVPCEKCGVKLTSKYGLKRHMESMHPETEMTHICTTCGKVAPSAAALQRHISYMHKMERKYKCPMCDKAFKKTGGLKPNKNDEDARFICSSCWEALDSFHKFYLQVEEAHISLVKTNTTAEDDLKQEDDQVGQTLDEDVGKYDPECAEFLQADVKLEVKEDGDVCLPQYNPISDLEDKIDVLGNISKAKEKRSSDSSDSEDSESEIPLANLAKAKPNKRSKTKAATSSNDDLESSADWQDHHSVDDDDDEDDDDDESDYESKKPAPKRKTVTKTGKKRGRPCKNAIKDVTPKQTTEEQIKKRVLSQEYDEIIQQNMKLSCNVCLLPLANFFTLKKHYRAKHNERGYASCCGKKFLKRGILVDHIYTHLNPEHFKCDKCDKVLADRRCLEVHMNTHVTEKQRLYQCDQCLKSFFKKPLLTRHLHIHIPEEERKFPCEECNKFFPSNYTLRAHINNVHQNAYAKICDQCGKSIRGREQFQRHLLEHAGIPIPSVQCDKCGAKLKNKYGLKRHMNSMHTESNVPHVCNMCGKVAPNAAALQRHYSYVHKCERNHKCPMCDKAFKKAGGLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKMHRKEWEENRRHPHMGSATTAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -