Cnem010644.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454333.1:76193607-76214110[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.00084 0.073 13.7 2.7 2 23 166 187 165 187 0.97 2 34 0.13 11 6.8 4.0 1 23 200 223 200 223 0.92 3 34 0.0084 0.73 10.5 1.5 1 23 261 283 261 283 0.98 4 34 2e-05 0.0018 18.8 2.7 1 23 290 312 290 312 0.97 5 34 0.00053 0.046 14.3 3.5 1 23 426 449 426 449 0.96 6 34 0.38 33 5.3 1.9 1 20 486 505 486 507 0.94 7 34 0.0051 0.44 11.2 0.3 2 23 516 537 515 537 0.96 8 34 1.1 92 3.9 0.1 3 23 543 563 542 563 0.80 9 34 2.7 2.3e+02 2.7 0.2 3 23 576 596 575 596 0.95 10 34 0.13 11 6.9 0.1 1 23 672 695 672 695 0.92 11 34 1.1 1e+02 3.8 1.7 1 21 704 724 704 725 0.93 12 34 0.01 0.89 10.3 2.7 1 23 734 756 734 756 0.98 13 34 0.0048 0.42 11.3 0.7 2 20 787 805 786 808 0.90 14 34 0.12 10 7.0 1.6 1 23 886 909 886 909 0.95 15 34 2 1.8e+02 3.1 0.6 1 21 918 938 918 939 0.89 16 34 2.9 2.5e+02 2.6 1.8 1 19 948 966 948 969 0.88 17 34 6.7e-05 0.0059 17.1 0.8 2 23 977 998 976 998 0.98 18 34 1.8e-07 1.5e-05 25.3 1.3 1 23 1005 1027 1005 1027 0.98 19 34 0.0014 0.12 13.0 0.6 2 23 1058 1079 1057 1079 0.97 20 34 0.0001 0.009 16.6 4.0 1 23 1160 1183 1160 1183 0.98 21 34 0.13 11 6.8 0.8 2 23 1221 1243 1220 1243 0.94 22 34 0.56 49 4.8 4.2 1 23 1252 1274 1252 1274 0.89 23 34 1.1e-05 0.00093 19.7 1.0 1 23 1281 1303 1281 1303 0.98 24 34 0.0012 0.1 13.2 3.0 2 23 1327 1349 1327 1349 0.96 25 34 0.0013 0.12 13.1 1.1 1 23 1390 1413 1390 1413 0.95 26 34 0.17 14 6.5 1.2 1 22 1420 1441 1420 1441 0.96 27 34 0.23 20 6.0 0.6 1 23 1450 1473 1450 1473 0.91 28 34 0.0042 0.36 11.5 2.1 1 19 1479 1497 1479 1497 0.97 29 34 1.7e-05 0.0015 19.1 1.2 1 23 1509 1531 1509 1531 0.98 30 34 2.7e-06 0.00023 21.6 0.3 1 23 1550 1572 1550 1572 0.96 31 34 0.00057 0.049 14.2 4.3 1 23 1578 1600 1578 1600 0.99 32 34 1.2e-07 1.1e-05 25.8 1.8 1 23 1606 1628 1606 1628 0.99 33 34 6.6e-07 5.7e-05 23.5 2.4 1 23 1634 1656 1634 1656 0.99 34 34 0.00026 0.023 15.3 0.1 1 23 1662 1686 1662 1686 0.92
Sequence Information
- Coding Sequence
- atggaaacactTCAAGCCttggaaaatttcaatattgGAGATGTGTGTCGAGGTTGTCTGGAAACTTGTGACCAATATAATTCTCTATTGAAAGACGCGGAGTGCATAGAAAATCTATCCCTGGGCGACGTCTTCTTCGAAGTAGTACAGAttcaaAAGAAAAACCAACTAGAACTACTATCTAATCAAATTTGCTTGCCATGCTCGAAAGATCTCGTACACGCATatcattttatacaaaaatgcaAGCGAAGCAACGAACGTATGGTCGAGTACTTAAAGAGGCAGCCCGATTGCTTGTCTGAATCTCCCATTGACATTCCAAACGATACGAATGCAGCTaactttttacaaattaaaGTTGAAAACGAAGGAATCAGTGAATATGCCCAACCATTATCCGAAGACAAGATCTCACCATCAAGTTCATCTGATTCTGACGGCAGTGATTATGAAGATTCCTTATTACACGAAGAAGTGAAAAGCAAGAAATTGCAATGCACGTACTGTGACCGAATATTTAAGAGATTAGATTTTTTTGATAATCATAAACGAAAACACGAAGAAGAGATTAAAGCGAAAGaACGCAGCAAGTTATTTTTATGTGATGAATGTGGATTGTGCTGTGGAAACCAACAAGCACTCATGTCCCATCGAATGGCATGCCACGCCTCCagcaaaaaatcaacgaagaaaaggaagaaatccATAAATCAACGGCAAACAAAAGTAACCACCCGCAGTCAAACAGTCAAGCGATCGAAGACTCCTTCTGGCCGTTTTGAATGTGATTCTTGTAGCAAAACGTTCGCCTGGAAGAAGGATTTGTACCGCCACGAGAGATACCATGAACCCAACACAAAAAAGTTCCCTTGTCCACACTGTGATCGTCGGTTTATTCGAAAGGATAAGCTGGTTTCGCATCTGCACGTTCATACGCCAAAGAGTATTCAATATTTCGCCCAGAATTTATTTTCGGAGAAAAAGTTCCAAGAAATCAAATGCATGCTTTGCAACTTTAGCAAAGCGTCCAACGTCCGTGATCTTCGTCAGCATATTGGTTCGCATAAtaacttgaaattgattaaGGATCTAGCTAGTAGCGAGGTAGTGAAAAGGTTTTACTCCGATAAAGACCTGTCCGAAGCTATGTCCTTGATAGCCAGTCAAATTGAGAAAGAGCACTAtgagaaattttattcaatagtCAATGCGAATAGCTATGAAATGGGCATAAGCGATTCCGATGAAACTGATCCAGAAGAGGAAATTCAATACACTTGTGAAGTATGCCAGGAGTCTTTTCATCGAAAGTACAAGCTCATGCAACATCAGTCCTATGAACATACTTTTGATGAGTGTCCCTACAAGTGTGAGTGCTGTAAACTGAGATTCACTTGCCACAAAGTGTTCGAGAGTCACCTGAAGCATCACTGTGAGAATCTCGAAAAGGAATTCCAATGTAAAAAGTGTCCCGGTCGATTCACTTGGCTGAAGAACTTGGAAAACCACAAATGCGAAAAGGCTATTGATAAGAAAGGTCTCAGCTGCGATACTTGTAATGATATTTTCAGCACTCCCAGAGAGCTTAGAATACATAAAAAGATTCACGATGAGCCTCAAGACTGTGCGATATGTGGCGAGCAAAATCTAAGCCCTGAAAACCTTCGCTGGCACCTGAAGATGCACGCAACGAGGGACAAGttggcgacaaaaaaaaatatctgtatGCTCTGCCAAGCCGAATTCCCAAATATTCGAAGGTTAAAGGATCATTTGTTCTCACATTCGGACGGCCAAACAGACGTTAACTTCAAAAACTGTGAATTCGTAAGCAATTTCCGTCCAGTCGAAACTGAAAGCAATATTTCGGAGTCAATTCGGAGTTGCTTCAAAGAGCAAAAGCTCTGGCAATTGTATTATGCGGTGAATAAGTTTGGTGACGAAATGCTCTTAAGTGATTCTGATAGTGACAATGAAGACGAGGCTCTGGAGAGTTGTGCTTCGAAACCATATATCTGTGAGGTGTGTGGTGTGAAATTTCCTCGCCTGCAAATCATCCGACAACATCAAAACGTTGAACATAATCCGGCTAAGACTAGTTTTCCGCACAAGTGCGATGAATGTGGCGATAAATTTATTTGCGAAGCTCTCTTAAGGCGCCACACAAAGTCGGGCTGTTTGAACTTGAACAAGCCTCACACTTGCTTAAAATGTGGGATGAAATTCACTTGGAAGCAAAGCTTGGATGCTCATCAAAAGACGCATAGTCCATTGATCGGAAATTCACGAGCTCTACGCTGGCGTATGAGGTTAAACTCTAAAAGGGACAAGGCATCACCGACAatgaagaaatttctgtgtATGCTTTGTCAAAAAGACTTCTCAAGCTTAAGTAGCTTAAGACAGCATTTACCTTCGCATTCCGATGGAAAGACTGATGTCAATTTTAAGACTTGTGGATTTGTGGCCAGTTTCTATCCAGATGCAAATGAGACCGCTATTTCCAAATCCATCCGCAGTTGTTTCACTGACCAAAAACTCTGGCAGCTATATTTGGCAGTGAATAAATTTGGCCACGAGATGGTCCTGAGCGACTCTGAtagcgaagaagaagaacagcaaCAGCAGGCAAAGGAGAGTCCCGCGCAAACCTATATATGCGAGTTGTGTGACATGAAATTCCCTCGAATGCAATTTATTCGCCAACATCAGCACTCCGAGCATGATTTGGCAAAATCCGACTTCCCGCATAAATGCACCGAGTGTGGCGATCAATTTGTGTGCGAGGCTCTACTAGGGCGCCACATAAGAAGTGAATGTGCCAACTCATACAGAACTCACGCATGTACGAAATGTTCGACGAAATTTACTTGGGAGCAAAATTTGGCAGCGCACAATTGTAGCAAAGGATCGAAAGATGATAAAAAGTGTGATGTCTGCGGCAAGACGTTCATATGGCCAAAGGATCTGCAGCGTCATAAGCGCAGTCACATTCCGGAGGAGAAAAAATTCGAATGCCTAGTCTGTGGCAAAAAGTTCAATCGAAAGGATAACATGCGACAACATATGCGAGTGCATCAAGCCGACGATGAGGTAAAGACAAAAGCCGTACTCAAGTGGAAGGAGCAGGATGAAAACGTGTGCAGGCCACACGGAGAAAAAACCATTCAATGCAAGATCTGCTCAACAAAGTATAACTCAATTAAGGATCTTACATCTCATTTGATAACGCATAAAGAATGCCTCGAAATGAGCGAACCGGAGGTGAGAGAGCTTTCAGTGCGATTTTATCGCAGACAATTGGGTACGGTGGCTTTTTCGCGTGCAATTTGTCGCGATATCACCGAAGGCAAACACGCACGTTTCTATTCGATTGCAAACGAGATGGGCTATGAGCTGAACGTCTTGGATTCCGAAACTGGTAGTGATATGGGTTCTACAGATgcagatgatgacgatgatcaaCCCAAAGGCTATACTTGTAAGCTGTGCAATAAAAGCTTTAatagaaagtttaaaattttcgaaCACCAAAGGACTGAACATTCGTGGGATGAATTACCCTTAGAGTGTAGCCATTGTTCGGCGAAATTTGTCTGCGAAAGGCTCTATAATTGGCATCTAAAATACCAATGTGAGGATAGTGAAAAACAACTGAAATGCAAGTGGTGTCCTTTGAAATTCATGTGGAAGGATAATTTGCGAATGCACGAAAAGTATACACATGATAAGTTTCCAACCAAAAAGAGGTTCCATTGTAAAATTTGCGATAAGAGTTTTCTCTGGTTCAAGGAGCTGTCGAGACATAAGAAAAGCCATCGATTGGAGGAAGAGAAATTTGAATGCACTTGGTGTTTCAGGATCTTTATGCGGAGAGATAATCTTAAGGTTCATATGAAAGTTCATCAGAACGCTAACCATCTCGCCCTACCTGATATCTACTACCTGGCTCGACCAAATGGAATCAAAGTTGCGGAATGCAAGCATTGCGATCAGAAATATTCCAGTGCTCATGAGTTGCTCGATCACATTAAAAATTCGCACCTAAAGTGCCAAATCCCAAATGACACTCTCAATCCATCCAGTTACTCGATTACAAACGCGTTGGGCTACGAAATGGACATCGATGACTCCGAAACAGAAAGAGAGGAACCGATAGAAAAATACGCCTGTGAACTCTGCAACGCACGTTTCAATCGGCGCTTCAAACTGCTGAAACACCAACAAGCAACACACTATTCCGATACGATACCACACCAATGCACAGAATGTAATTTCAAGAGCGTTTCGAAATATGTGTTGGGCTATCACATGCGAACGCAATGTATGAACGCAGTCAAACAACATCGCTGTAGCAAATGCACAATGCGTTTTATGTGGCCGGAAAATTTGGAAAATCATGCCAGCCTAATACACGATAGTCCACGAACTCACACCTGCGAGGTGTGTAAGCGTGACTTTGCCACTCAACATGACTTAAAGAATCACCCCAACTGCAAACCACCGATAGAAGTTAAGCTTTTCGAGTGTGAATTGTGCGATCGCAAATACAATCGAAAAGATCGATTGATGAGGCACATAAAGGTGCACAGTACGGATGGAGCAAAAGAAGGACGCGTCAAAACTACGGCACCAACTGATAAATTTTTATGCACCTACTGTGGCAAAGCAGTATCGAGCTCTTCGAATTTGGTGATACATTTGCGAAGACATACTGGCGAGAAGCCATTTAAATGTGAGTTTTGTAATAAAGGCTTTCCACGATCTTCAGATTTGAGTTGTCACAGGCGAACGCACACCGGGGAGCGACCTTATAAGTGCACCACCTGCGACAAGGCATTTGCACGTTCATACAAACTGCAAACTCACATGCGCATTCATTCGGGCGAGAGGCCCTATAAGTGTACATACTGTGAGAAGAGTTTCACTCAATCGAATGATTTAACGCTACACGTCCGTAGGCATACTGGCGAAAGGCCATATATTTGCGATATTTGTGGAGAGAGGTTTATACAGGGAACAGCGCTTAGGAATCATCGAAGGATACAGGGACACTATGAGGTGTAA
- Protein Sequence
- METLQALENFNIGDVCRGCLETCDQYNSLLKDAECIENLSLGDVFFEVVQIQKKNQLELLSNQICLPCSKDLVHAYHFIQKCKRSNERMVEYLKRQPDCLSESPIDIPNDTNAANFLQIKVENEGISEYAQPLSEDKISPSSSSDSDGSDYEDSLLHEEVKSKKLQCTYCDRIFKRLDFFDNHKRKHEEEIKAKERSKLFLCDECGLCCGNQQALMSHRMACHASSKKSTKKRKKSINQRQTKVTTRSQTVKRSKTPSGRFECDSCSKTFAWKKDLYRHERYHEPNTKKFPCPHCDRRFIRKDKLVSHLHVHTPKSIQYFAQNLFSEKKFQEIKCMLCNFSKASNVRDLRQHIGSHNNLKLIKDLASSEVVKRFYSDKDLSEAMSLIASQIEKEHYEKFYSIVNANSYEMGISDSDETDPEEEIQYTCEVCQESFHRKYKLMQHQSYEHTFDECPYKCECCKLRFTCHKVFESHLKHHCENLEKEFQCKKCPGRFTWLKNLENHKCEKAIDKKGLSCDTCNDIFSTPRELRIHKKIHDEPQDCAICGEQNLSPENLRWHLKMHATRDKLATKKNICMLCQAEFPNIRRLKDHLFSHSDGQTDVNFKNCEFVSNFRPVETESNISESIRSCFKEQKLWQLYYAVNKFGDEMLLSDSDSDNEDEALESCASKPYICEVCGVKFPRLQIIRQHQNVEHNPAKTSFPHKCDECGDKFICEALLRRHTKSGCLNLNKPHTCLKCGMKFTWKQSLDAHQKTHSPLIGNSRALRWRMRLNSKRDKASPTMKKFLCMLCQKDFSSLSSLRQHLPSHSDGKTDVNFKTCGFVASFYPDANETAISKSIRSCFTDQKLWQLYLAVNKFGHEMVLSDSDSEEEEQQQQAKESPAQTYICELCDMKFPRMQFIRQHQHSEHDLAKSDFPHKCTECGDQFVCEALLGRHIRSECANSYRTHACTKCSTKFTWEQNLAAHNCSKGSKDDKKCDVCGKTFIWPKDLQRHKRSHIPEEKKFECLVCGKKFNRKDNMRQHMRVHQADDEVKTKAVLKWKEQDENVCRPHGEKTIQCKICSTKYNSIKDLTSHLITHKECLEMSEPEVRELSVRFYRRQLGTVAFSRAICRDITEGKHARFYSIANEMGYELNVLDSETGSDMGSTDADDDDDQPKGYTCKLCNKSFNRKFKIFEHQRTEHSWDELPLECSHCSAKFVCERLYNWHLKYQCEDSEKQLKCKWCPLKFMWKDNLRMHEKYTHDKFPTKKRFHCKICDKSFLWFKELSRHKKSHRLEEEKFECTWCFRIFMRRDNLKVHMKVHQNANHLALPDIYYLARPNGIKVAECKHCDQKYSSAHELLDHIKNSHLKCQIPNDTLNPSSYSITNALGYEMDIDDSETEREEPIEKYACELCNARFNRRFKLLKHQQATHYSDTIPHQCTECNFKSVSKYVLGYHMRTQCMNAVKQHRCSKCTMRFMWPENLENHASLIHDSPRTHTCEVCKRDFATQHDLKNHPNCKPPIEVKLFECELCDRKYNRKDRLMRHIKVHSTDGAKEGRVKTTAPTDKFLCTYCGKAVSSSSNLVIHLRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPYKCTTCDKAFARSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYICDICGERFIQGTALRNHRRIQGHYEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -