Cnem002584.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:38740765-38742885[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3 2.9e+03 -1.5 0.1 16 26 8 18 3 24 0.75 2 9 0.049 60 3.9 0.0 17 29 58 70 49 83 0.82 3 9 0.002 2.5 8.4 1.2 18 31 226 239 224 245 0.82 4 9 0.041 51 4.1 0.8 6 29 243 265 238 275 0.72 5 9 0.032 40 4.5 2.7 18 29 282 293 271 303 0.78 6 9 0.0036 4.5 7.5 0.5 19 39 311 328 299 334 0.89 7 9 0.0069 8.5 6.6 1.1 14 38 334 355 325 360 0.83 8 9 0.0082 10 6.4 0.2 19 39 367 384 361 391 0.89 9 9 0.012 15 5.8 0.2 19 31 395 406 386 421 0.86
Sequence Information
- Coding Sequence
- ATGGCAAATGAAACCGAAATGGAAGTTATTTGTCGAACATGCCTCACGGAAACAAATTCGTTTAAATCCATCTACAAAGTGGGAATGCTATGTGGAGAAATCACAACGCTGTCGGCGATGTTGAACGAATGCACGTCTATTGAGTTCAACGAAGAGGAAGACCTACCTCGATTTATATGCATGAAATGCGTTGTCCAAATTAGTAGGTCATACCTGTTCCGACAAACtgttttcaaatcaaatgaaacCCTCAGAGAACAgcacacaaatataaaaaaCGAGGAGGAAATGCTTGATACTCTATTCTACTATGAGCAATCAGTTCAAAGTGAAATCatggaagaagatgaagaagagggagAAGAGGAGcaggatgaggaggaagaagaagaagacgaacaaACACAAGCCAACGAAGATGTAGGAGATGGCTTTATTGAAAATGATGCAATAAAAATCGAATTGACTTCAACCGAAACCGATATTGGAACTCAGTATGAAGTTActgtcttaaataatgatgatCAAATGATGATCGAAAGAAATGAAGAGGTCACAGATGAGACAAGTCAAACAAGCAGTTTCAAGGAACCAGATGTTATGCAAGATGTCGGAAAGTTGGTTCCACAAAAACGTCGCACtcataggagaaaaaaaattcccggACCACCGTTCAAGTGcgaaatttgtggaaaaatctTAAGCAATCACAGCTCGTATAAGTATCACATGCAACTGCATTCGGATGCCACTCCTTTTCTGTGCAGCCATTGTGgcgaaaagtttaaaacaagAAATGCCTACGATGGTCATATGACAACTCATGATTCGCTTAATCCCAATTGTTGTAATATATGCGGAAAGACTTACAGACAGGCAAGCTCACTGCGAATTCATATTCTAACACACACGGGCGAGAAACCATATCTTTGTGGTATTTGTGGTAAGGGGTTAACACAAAAATCCGGATTCAAGAAACACATGCTCGTGCATACAGGAGAGAAGCCTTTCAAATGTGATATATGCGACAGGGAATTTCGATATTCTAGCAACCTTATAACCCATAAAAGAGGGCACACGGGCGAGAAACCATTCCCATGCAAGctcTGTGATAAAAAGTTCACCAGCGGGGAACAGCTCAAGCGGCATCTTCTAATTCATTCTGGCGAGAGACCTTTCGCTTGTGATTTATGTGGGAAAACCTTTAACCGCCGCAGCACTCTATTGGTGCATAAACAAATCCACATGGCAAAAAATACGACTGCAGCGaaaaacaaggaataa
- Protein Sequence
- MANETEMEVICRTCLTETNSFKSIYKVGMLCGEITTLSAMLNECTSIEFNEEEDLPRFICMKCVVQISRSYLFRQTVFKSNETLREQHTNIKNEEEMLDTLFYYEQSVQSEIMEEDEEEGEEEQDEEEEEEDEQTQANEDVGDGFIENDAIKIELTSTETDIGTQYEVTVLNNDDQMMIERNEEVTDETSQTSSFKEPDVMQDVGKLVPQKRRTHRRKKIPGPPFKCEICGKILSNHSSYKYHMQLHSDATPFLCSHCGEKFKTRNAYDGHMTTHDSLNPNCCNICGKTYRQASSLRIHILTHTGEKPYLCGICGKGLTQKSGFKKHMLVHTGEKPFKCDICDREFRYSSNLITHKRGHTGEKPFPCKLCDKKFTSGEQLKRHLLIHSGERPFACDLCGKTFNRRSTLLVHKQIHMAKNTTAAKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395988;
- 90% Identity
- iTF_00310487;
- 80% Identity
- iTF_00310487;