Cnem011977.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- At3g55350
- Assembly
- GCA_949716465.1
- Location
- OX454334.1:13082611-13085546[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-09 5.3e-06 26.2 0.2 5 37 295 328 293 335 0.86
Sequence Information
- Coding Sequence
- ATGCGAATATGCAATATCCGTATTATGGATGGCATTGCAGTACCAATGGCAGCTTCCTCTAATTTGcATTACATGCATAGTAATGATGCGCCTTTGGAAAGCAGTACGCTCGACTCGTTTCAGTCTTTACCTGAGACAATCCAACAAAATGTCGAAATGGAAAATCTACAATGGATGAATCACACCGACActattataaattttcaaaagtctCTAATTTATGATCTAGGTACATGTGAAATAACAATTGCATTTAATGATAAATCAGTCAAACTCCATCGTTGTATACTGGCCGCTTGTAGTCCGTTATTACGTGACGTACTCCGAGATGTACCAATTGGTCAAGATGCTACTATAATGCTTCCCGAGACTAACGGCAATTTATTGGATAATATAGTGAACTTTATATACACGGGTGAAACGACTGTCAGTTCATCGGATTTGACAGAATTTCTAGAGGCTATCGGAAATCTCGGCATAAAAAGTCCCATTGGCTTCGATTGCGCCAATGTTTCTCCTACCACGGGTAATGAGGAAtttttagaagaggaaattATTGACATTGACGATGAAGAGGAGTTTACATTTGTCGATGAATGCTATTCTATTGAAGATAGTGCTAATGAAAAACCAACTGCATCCATTCCATATGAGAATTCACATGCAGACCAGAGTGGTTCAACGATATCAACAACACTCAAGAAAACCAGCGACACTACAGCCGTCATTTTACATGAGCACCTTAACATGCCCAGCGCAAGATCATCAGCCATCAACAAAAAATCATCTGATGAAGACGATGTAGTTAATACTGATAAAGTCAACGAATCACAGACATTTCGCGATAGAGTAAATAGGTTAAGAGTACAACAAAAGAAATCACTCAAGAAGGCTTTTTTGGCTTATTCAAATGGTAGCATGAGCTTACGAAAAGCGGCTACGGcacataatatttcacactcAGCTTTGCTTCGAGAAGTAAATAGCAGCTCTTTAAGAACAATGTCTGATTCCAGCGACGATGAAgaggataaaataaaaactgataTAATTCGTCTGCGAAAGCATATTAGGGTAAAATCTAATCCATTGGACTTACCTGATCTACAatttactAAAACATTTGGAATGCCCAAAgaagcatttacatatgtacttgacCAAGTAAAAGACAAGCTTCCCGACGCAATTCGTTCATCGTCCGTAGCACCAGCATTAAAACTTGCAGCAACCTTAAGGTTTCTCACTGAAGGCAGTTACCAAAAGGGTATGGGTAACGATATTGCTTTGGGATTGGCCCAGCCTACGCTAAGTAAGATCCTCAAAGACATGCTAATAGCCATAGAAACTTACATCTGCCCGCACTGGATACGATCTGAATATTCAGAAGAAGACAAAATGCAAGCGAAGTTGCACTTTTATAAACAAGCAGGGATCCCTGGAGTTATTGGCTGCATAGGAAATACTCATGTGAAGATATTAGCTCCCAGTCAAGCAGAACAGCGCTTATACCAAAACACAAAAGGTTTTCATAGCCTCAACGTTATGATAGTCTGTGATCATCAAATGTTCATTAGATATGTGAATCCAAATCAACCGGGTGCCAGTGACGACGTGGCAGTGTGGATGTCAAGTGAATTCCGtgaaactctaaagaaaaactttcaaaaaggggaaaaaaacaCTTGGTTGTTGGGTCACGGTGGTTACCCACTCGAACCATTCCTGGTAACACCATTCAGAAAACCCAAGGAAGGAAGCAATGAAAGTAGCTTCAATAAGCGACACTTAAAGAcaagaaatataatatataaaacaattgCCATTCTAAAGAACCGTTTTCAATGCCTTCTGGGTGAAAAGCAATTACACTACACTCCGCAAAAATCAGCTCAAATCGTCAAAGTATGTGCGGCTTTGCACAATATATGCCTGCATTATAAGTCATTCCCTGAAATAGGTCCAATTTTTCAAAGCGATTCTGATTCAGACACAGAAATAATTGGAAGTACACATATCGATCCAGTGGCTGTAGATCTGCGAAACCATCTGTTGGAAGCTATTCAAAAACTCCATTAG
- Protein Sequence
- MRICNIRIMDGIAVPMAASSNLHYMHSNDAPLESSTLDSFQSLPETIQQNVEMENLQWMNHTDTIINFQKSLIYDLGTCEITIAFNDKSVKLHRCILAACSPLLRDVLRDVPIGQDATIMLPETNGNLLDNIVNFIYTGETTVSSSDLTEFLEAIGNLGIKSPIGFDCANVSPTTGNEEFLEEEIIDIDDEEEFTFVDECYSIEDSANEKPTASIPYENSHADQSGSTISTTLKKTSDTTAVILHEHLNMPSARSSAINKKSSDEDDVVNTDKVNESQTFRDRVNRLRVQQKKSLKKAFLAYSNGSMSLRKAATAHNISHSALLREVNSSSLRTMSDSSDDEEDKIKTDIIRLRKHIRVKSNPLDLPDLQFTKTFGMPKEAFTYVLDQVKDKLPDAIRSSSVAPALKLAATLRFLTEGSYQKGMGNDIALGLAQPTLSKILKDMLIAIETYICPHWIRSEYSEEDKMQAKLHFYKQAGIPGVIGCIGNTHVKILAPSQAEQRLYQNTKGFHSLNVMIVCDHQMFIRYVNPNQPGASDDVAVWMSSEFRETLKKNFQKGEKNTWLLGHGGYPLEPFLVTPFRKPKEGSNESSFNKRHLKTRNIIYKTIAILKNRFQCLLGEKQLHYTPQKSAQIVKVCAALHNICLHYKSFPEIGPIFQSDSDSDTEIIGSTHIDPVAVDLRNHLLEAIQKLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310425;
- 90% Identity
- iTF_00310425;
- 80% Identity
- iTF_00310425;