Cnem006505.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454333.1:4090297-4090726[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-10 4.9e-07 29.5 0.0 17 42 1 26 1 28 0.94 2 2 8.1 9.4e+03 -3.4 0.0 14 22 51 60 49 62 0.60
Sequence Information
- Coding Sequence
- ATGGGATTACGAAAAGCGAGTAGAGAGTTCGGAGTGCCAACCACAACTCTTCACGATAGGATAAAAGGCAAAGTCCAGGATGAAATCCTAACTGAATTTTTGGAAGAAGAATGCTGTAAAGACATCCTGTTGGACCCGAAAAGAATTTTCAACGGAGATGAAACATCTTTCAGCTTAGCTTCAAAGACTGGAGCTGTAATTGGTCCGAAAGGTGTTAGAAATCTTTACCAGGTGAAGTTCTCGAACGAAAAAGACAACATTACGGTGCTCTTGGTGTTTTCTGCAAACGGTGGAATATTGCCTCCAGTGGTCGTGTTCCCTTACCTTTGTCCCCCAGCTCAAGTTGTAAGATCCGTACCTCCAGATTAG
- Protein Sequence
- MGLRKASREFGVPTTTLHDRIKGKVQDEILTEFLEEECCKDILLDPKRIFNGDETSFSLASKTGAVIGPKGVRNLYQVKFSNEKDNITVLLVFSANGGILPPVVVFPYLCPPAQVVRSVPPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -