Cnem010451.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- pol
- Assembly
- GCA_949716465.1
- Location
- OX454333.1:72927176-72932542[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-10 2.4e-07 30.5 0.0 5 37 1 33 1 40 0.91 2 4 4.8 5.6e+03 -2.7 0.0 14 22 119 127 115 130 0.68 3 4 8.3 9.7e+03 -3.5 0.0 29 38 226 235 220 237 0.76 4 4 2.3 2.7e+03 -1.7 0.0 23 36 404 418 400 423 0.76
Sequence Information
- Coding Sequence
- ATGGATGAAGCAATGGAGAAGGTTCAAAATAAAACGTTGGGAGTAAATGAAGCAAGTAGGGAGTTCAATATTCCATCCAGAACCCTGAGGAGACACATTCTAAAAGGCAAGTCAAATAAATTGCTTGGTCGGTCAACTGCTTTATCATTGGAGCAAGAAAAAATATTGGTTGCccacataaaaaaattggaaaaagttgGTTTTGCTCCTGACCGAAAAGACGTTAAAGAAATCGCTTATCGTTTCGCCGATCGTCTTGGATTAGCACACCGTTTCTCAAACGACATTAAGGCGGCTGGTAATGTTTGGCTTAATGGTTTCTTAAAACGTAATCCAGAGTTATCAATAAGGAAATCTGAAGGCCTATCGCTAGCAAGAGCCTATGGTATGAATCGAGCTGACGGTAAAGACTTTTTCGACGTATTAAAAACTATATACCAAGAGCATGATCTTCTAAAGAATCCTGGTAACATATACAATATGGATGAGACAGGAATCCAAGTCAACAACAAACCAGCAAAGGTTTTGGCATCAAAAGGAGCTAAGGATGTTTTTACTCTAACAAGTTCCGAAAAAGGAGAAAACGTTACTGTCATAGCCTGGTGCAATGCTAAAGCTAAGTTGGAAGCGAATGGAGGAGTTCGATTCATTAACCAGGAATTGGCAAGGCACTTCCCGCAGAGGACGTTGGAAGCGATAAAGAAAGCTAGGCAGAAAGCTACATATCGCTCCGACGGCGACGCGGGATGCGTCCAGTTCTTCAACACCTTCGACACCAGGAATGGATGCGACCTTTTGATCCAACATCTTCAGGACCTCCCTTCACTTAGCGTAACCACATACAGCAGCGGTCATCTATACAACATCATCCAGGAAGCCGCGTCAGCCGGGAGGGACGCGGCGACAATACTCCTTGGCCTTTACTTAAAGGAGATCCTTCCATCAGGAACCACTGCACCTAGAGCGCGAGACCGTGCAGCAGCTGGAGGCGATAACACCAGTAGAAGGAAACTGAGGCGTATGGAATACAGCAGAACCCAACGGAATTGTTCGAAGCACCAACAGAGGTGCATCAAGACGATTCTTGAGCTTCCCAGTGTAGCCAGGATGCCACCCGCCAACATTATGGAGCCCTACTGGCGAAGGATCATGGAGCAAAGGACAACATCAGCACCAGCCTACTCGACTCGGTTGGACACCCATCACGGAAGCAGACATCAAGGACTCCCGGCCGCCACTCTCTACATCACCAGGACCGGACGGGGTCTCGGCGAGGCAGCTCAGAGCGATTCCCAATGA
- Protein Sequence
- MDEAMEKVQNKTLGVNEASREFNIPSRTLRRHILKGKSNKLLGRSTALSLEQEKILVAHIKKLEKVGFAPDRKDVKEIAYRFADRLGLAHRFSNDIKAAGNVWLNGFLKRNPELSIRKSEGLSLARAYGMNRADGKDFFDVLKTIYQEHDLLKNPGNIYNMDETGIQVNNKPAKVLASKGAKDVFTLTSSEKGENVTVIAWCNAKAKLEANGGVRFINQELARHFPQRTLEAIKKARQKATYRSDGDAGCVQFFNTFDTRNGCDLLIQHLQDLPSLSVTTYSSGHLYNIIQEAASAGRDAATILLGLYLKEILPSGTTAPRARDRAAAGGDNTSRRKLRRMEYSRTQRNCSKHQQRCIKTILELPSVARMPPANIMEPYWRRIMEQRTTSAPAYSTRLDTHHGSRHQGLPAATLYITRTGRGLGEAAQSDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -