Cnem001616.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:22001929-22011350[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.5e-13 6.4e-10 38.7 0.0 4 42 126 165 123 167 0.87 2 3 0.62 7.3e+02 0.1 0.0 28 37 197 206 196 212 0.85 3 3 1.3e-09 1.5e-06 27.9 0.0 3 39 235 271 234 274 0.87
Sequence Information
- Coding Sequence
- ATGGGTACGTTCCAAACCTTAGTCCTAGTTTTTAAGGACGAAATAAGAAATATCGATGTCTCCGATACAGATACAAATGACGCGTCAGCGCAACCTGCTGCATCGATAGATGCGGCTGCTTCAACAAATGACCAGTACTTGATATTTGAACTGAAAACAGACACAGAACCTATGTACAACTATGTCATCACACAAATAAAGAAAGGACCACCCGATGATGGAGATCCCACTCAGAATGTATCGCCTGATCTTAGTAATCCGGGACCGCAACCAAAGCCCCCTCCATTTGTCATAAGTGTCCAGATACCATTTGAAGGCGACAAAGAAGAGACCAAGGAGAATTCGCCAAAACGTCGACGTGCCTTAAATCGAAAGCGACTTACCGAAGCCCTAGATGCCGTCCTCAATAAAGACATGACGATCAGTAAGGCTGCCACTGCCTTTCAGGTGACAAAGAGTACCCTTTGGAAGGAGGTCAACAAACACACAAATCATCGCCGGAAAAAGGTCGATCACGAGCTGAAACGCAAGATCACTGATCGGATCTGTTCCGGGGAATCTCTTTCAGGCATCTCAAGATCCTTAAAAGTCGCTAAATCGACCTTACATCAGCATAAAGTTCGACTTGCACAGAGCGGGCAGCTGCCATCAAATGTGACCCTTAAGCCATCTGTAGATCCATCGGAGAAGCAAGCCATGAAGGAACGTATTATACAAGCGTTTCGGGGCTGCCGAGTGAATGGTATGTCAATACGTTTTGCGGCGAAATTTTTCTCCATACCACCGACGACACTTTGGAAATACGTACGAAGATTTAGAGCTGAGCAAAAAGCCAATTCTGAAACACTTAAGCCAGCAGTGGACGAGGAGGAAACTGTCGAAGAAGACACCTCAGAGGAGCAATCGGAGAGTAACGAAGATGTAGACTTGAATGACTTTGATGTTGACGCCTATTGTGAGCAGCCAGAGGAGACAGCCAGTGAGGATGGTGACTTTTTGATCAGTTTTGACTTTGAAACTTTCGAAGAATATGTGAAAAGGGAACTCGAGTAA
- Protein Sequence
- MGTFQTLVLVFKDEIRNIDVSDTDTNDASAQPAASIDAAASTNDQYLIFELKTDTEPMYNYVITQIKKGPPDDGDPTQNVSPDLSNPGPQPKPPPFVISVQIPFEGDKEETKENSPKRRRALNRKRLTEALDAVLNKDMTISKAATAFQVTKSTLWKEVNKHTNHRRKKVDHELKRKITDRICSGESLSGISRSLKVAKSTLHQHKVRLAQSGQLPSNVTLKPSVDPSEKQAMKERIIQAFRGCRVNGMSIRFAAKFFSIPPTTLWKYVRRFRAEQKANSETLKPAVDEEETVEEDTSEEQSESNEDVDLNDFDVDAYCEQPEETASEDGDFLISFDFETFEEYVKRELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -