Cnem004524.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- retn
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:77534824-77581166[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.95 2.4e+03 -0.8 0.0 41 65 112 137 107 146 0.76 2 2 3e-26 7.3e-23 80.9 0.0 2 89 287 372 286 372 0.96
Sequence Information
- Coding Sequence
- ATGACTCTGATTCCCAGCTTTTTGTTGGTATACCATCTTCCTACTGACTGTAGCCCCACTTTCTCTCTGTTGGCGATTCGACGTGAATTCAAGGCTTGTAAAGCTTTGACGtcaaACGACGAACATTCTGAGGACGATATGAGAGACTGCGAGTCGGTTGATGACGAGAATACCGGCCGATTAAACGCCGCAATGGCCAACGGGATGGTGGCCATGGACTACGGAGCGCTCGGAGGTGGCCGGAGTCCAgaacaacacaacacagaaaTTCCAATGAGTCACCATCATGCACAGTTCGCTGCGAATCATCCGCTGGGAGCACTAGGCAATTTCATGAGCATGGGCGGCCTGCACAGTATTCCGAatctgcagcagcagcacaacgATGTGCTGGAGAAACTAAAGATGCAGGTTCGCGACATGAAAGTCGGCCTGATGGATCAGGACTATCCACCACATGGTAACTTTGGCTCTAACGTCATTCCAACTCCCATCAATACAGCGTTCACAATTCCGTCAACTGCTCACACGTCGTTCAGTCACTCTCCGCAGAATTTATCGCAACAGTCaacgcagcaacagcaacagcttcAGCCGCAGCAAAATTTGCTGTCTacgcaccaacagcagcagcagcagcagcagcaacagtcgCAATCACAAACGAGTTCTCAATCGATGCCGAATGGTTTCTCGTTCACGTCGCCCTCAGCCCCAAGCACAAAAGACGTAAATCCTGCCTCAAATTCATCGACATCCAGCGAAACATCAAATTCGTCACAACAAAATAATGGCTGGAGTTTTGAGGAACAGTACAAACAAGTTCGACAGCTCTATGAGATCAATGATGACCCTAAGCGCAAGGAGTTCCTTGATGACTTGTTTTCATTTATGCAGAAGcgagGTACACCCATAAATCGCTTACCGATCATGGCGAAATCGGTGCTTGATCTTTACGAGCTATACAATTTGGTTATAGCGCGGGGCGGACTCGTCGACGTTATTAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGTTGCATTTGCCGTCAAGCATAACTAGCGCTGCGTTCACCTTGCGCACACAATATATGAAGTATCTATATCCATATgaatgtgaaaagaaaaacttgagcTCACCCGCCGAACTACAGGCTGCGATCGATGGCAATCGCCGGGAGGGACGTCGTTCCAGCTATGGTCAATTTGAGGCAATGCACAACCAGATGCAGATGccACAAATAAGAAATAATCTGCCCGGTGCAATGCAACAAATGTCTCCACTTGCATTGGTCACGCATGCAAGTCAACAAGCACCACATCACAGACTGATGGCGCCATCATTTGGTCAGGTCCCCAATTTGGTACAACACGAAATCGAGCAGCGCATGatggaatatttaaaattgataCAAGCCAAGAAGGAACAACCCCGCCCCAGATCCCAGAGTCCAGAAACAACCACCCGCGAAGCATTGAATGCCCTCGAAATGTCGCGTGTAGCTTTGTGGTCGATGTATCACAATAATACAAGTCCACCAGCTTCAGTTAATACCTCACCACAGGGAATCGAACCGCAACGtgAAGCATTAAACCTTTCGGACTCACCACCAAATGTTGTTATCAAACGTGAGCGTGAACGTGAACCATCGGAATTGGGTGCAAATTCGGATAGAGAAGATTTccaccaaccaccaccagcCAAGAGAGGATTTCCAGCGAATATGTTTGCACCACCACCCATAATACGGAATAGTTTTCACGATGACCGCGATGGCGAAGATACAGACAATTCCATGGCTAATACCTCACATGAAGAGCTAAATCATCACAATAACAATACATTGAATATGAAAGCAGCTCCTGCCGAACAAAATGGTCAACATTCGCCGGTGATATTGATGTCGCCACCAAAGAAACTAGTTGACACAAGTTTCTTGAACAATAATGGTGATAGTGGTAACCGCAATCCGCAACCGATCGAGCCAAAGCAAGCAGTTTCTCCACAAGCCATTACAAATGCAGAGTTGTCCTTACTCTCGGGCATGCAGTTTAAATTATCTCGAAAGACTACCGGTGCAAATGGCGAACAACAACTCTTGGTTAATCTCGAATTGAATGGCATAAACTACGAAGGTGTGCTCATTGCAAATCCCACATCGCCAACAAGTAAAGTCGCTACACCAAACGCATCAATACCATCGCCCACACCTGGCAATATTATCAACGGACCAACCAGCGATGGACAGAAAAAACCACCATCTCGCTTAGATGAGAGACCAATGTCCCTCTCAATACCATAA
- Protein Sequence
- MTLIPSFLLVYHLPTDCSPTFSLLAIRREFKACKALTSNDEHSEDDMRDCESVDDENTGRLNAAMANGMVAMDYGALGGGRSPEQHNTEIPMSHHHAQFAANHPLGALGNFMSMGGLHSIPNLQQQHNDVLEKLKMQVRDMKVGLMDQDYPPHGNFGSNVIPTPINTAFTIPSTAHTSFSHSPQNLSQQSTQQQQQLQPQQNLLSTHQQQQQQQQQQSQSQTSSQSMPNGFSFTSPSAPSTKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSSPAELQAAIDGNRREGRRSSYGQFEAMHNQMQMPQIRNNLPGAMQQMSPLALVTHASQQAPHHRLMAPSFGQVPNLVQHEIEQRMMEYLKLIQAKKEQPRPRSQSPETTTREALNALEMSRVALWSMYHNNTSPPASVNTSPQGIEPQREALNLSDSPPNVVIKREREREPSELGANSDREDFHQPPPAKRGFPANMFAPPPIIRNSFHDDRDGEDTDNSMANTSHEELNHHNNNTLNMKAAPAEQNGQHSPVILMSPPKKLVDTSFLNNNGDSGNRNPQPIEPKQAVSPQAITNAELSLLSGMQFKLSRKTTGANGEQQLLVNLELNGINYEGVLIANPTSPTSKVATPNASIPSPTPGNIINGPTSDGQKKPPSRLDERPMSLSIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314926;
- 90% Identity
- -
- 80% Identity
- -