Csis022413.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- nfxl1
- Assembly
- GCA_949987625.1
- Location
- OX465096.1:54674900-54677642[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1 2.4e+04 -3.2 1.1 15 19 123 127 122 127 0.81 2 20 0.84 1.9e+04 -2.9 0.4 4 10 158 164 158 164 0.82 3 20 1.2e-08 0.00026 22.2 16.7 1 19 172 189 172 189 0.99 4 20 0.26 5.8e+03 -1.3 1.4 12 18 201 208 201 209 0.74 5 20 3.7e-07 0.0083 17.4 13.2 3 19 227 243 224 243 0.94 6 20 0.51 1.1e+04 -2.2 0.2 5 10 267 272 267 274 0.89 7 20 9.5e-07 0.021 16.1 12.4 1 19 278 297 272 297 0.90 8 20 4.6e-05 1 10.7 8.4 1 18 333 350 333 351 0.97 9 20 0.0068 1.5e+02 3.8 7.6 1 12 385 396 385 396 0.94 10 20 1.2 2.7e+04 -3.4 1.7 6 10 406 410 406 410 0.97 11 20 2.6e-07 0.0057 17.9 15.8 1 19 416 434 416 434 0.93 12 20 0.00011 2.4 9.5 7.6 9 19 482 492 480 492 0.90 13 20 0.0023 52 5.3 5.7 3 12 503 512 495 512 0.83 14 20 0.85 1.9e+04 -2.9 5.8 14 18 543 547 543 548 0.89 15 20 1.9 4.3e+04 -4.1 1.2 15 18 562 566 561 567 0.65 16 20 7e-05 1.6 10.1 7.4 1 12 584 595 578 595 0.91 17 20 0.78 1.7e+04 -2.8 1.7 6 10 610 614 609 614 0.88 18 20 0.00016 3.6 9.0 12.7 3 19 623 639 622 639 0.92 19 20 1.8 3.9e+04 -3.9 1.7 9 13 645 649 643 649 0.73 20 20 7.3e-06 0.16 13.3 11.3 1 18 684 703 684 704 0.89
Sequence Information
- Coding Sequence
- ATGAGAAAATTTAGAAGAGCTCAagcaaaaaatcaaatttcaattcaaagatTTTTAGAAGCTAATAATGTGGAATCTTCTAGCAGTGATGATGATAATGAAGAAGTATTAGAAACAGCGGtagaaaaagttttatcaaattatcAATATGAAGGTggagatataaataaaattatatcatattTAACTGAAACATTTCAATCTGGTGGAGCAGTATGTTTAATATGTATTTCATCTGTAAAAAAAACTGATGCTatttggAGTTGCActaaatgttatacttttttacatttacctTGTATTCAACACTGGGTAAGAGATAGCTTAAGTGATAAACATGAAAAAGGAATTACACCCTTATGGGCTTGCCCAAAATGTAGAGCTGAATATCAAGAAGAAGAGATTCCAAAAAAATATCTATGTTTTTGTGAAAAAACTGAAGATCCAACATATCAGCCATGGTCAATTCCTCATTCTTGTGGAAATATGTGTGGAAAATTTCTTCACCCAAAATGTGGTCACAAATGTATGCTACTATGTCACCCAGGCCCTTGTCCTCCATGCCCAAAAATGGTTTCAAGTGCATGTTTTTGTGGAAAAGAAGGACCTTGTCCTAGACGGTGTAATGCCAAAGAATGGAGCTGTGGTGAATTTTGCAATAAGAAATACAAGACATGTGAACACAGATGTATAGAAAAATGTCATTCCGGTACATGCCCACCTTGTACAGAGAAAATTCTCACTGCTTGTAATTGTAAAAGTAAGTCTGAATTGAGAAAATGTAATGAAGCATTTTGGCGATGTAATAAAATATGTGGTAGGCGATTTTTGTGTAATGTTCACACATGTGAAGAAGTTTGTCATAAACCTGGAGACTGCAATACATGTCCATTAGAGCGCAATAGAACTTGCCCATGTGGTAAAAAGAAGTATGCTGTATCTTGCAAGCAACAGCAAGTACCAACATGTGGTGATACTTGTGGAAAATTGTTAGATTGTGGAGTTCATTATTGTAATATGAGGTGTCACACTGATCGTTGTGGACAATGCTTAGAGGTTGTAACAAAAACTTGTCGATGCGGCAGTTTTAGTAAAGAAATAGCATGTATTAAAGAatttcattgtaataaaaaatgctCCCAAATGAGGCTTTGTGGTAGACATCTTTGTAATAAAAAGTGTTGTGATTgtctgataaaaaataattttaacgtatGTGAAAAAGTATGTGATAATGCATTAAATTGTCGCAAGCATAAGTGTCCTGCTCCTTGCCACAGTGGACCTTGTTATCCATGTCCTCGTACTATAGTTATACAGTGTCGTTGTGGTAACAGTAAGATTACAGTTCCATGTGGTACTGTTAAGAAGATTAAACCTCCTCACTGTAACAAGATATGTAAAATTCCACCAATTTGTCATCATCCTAAAAGAGAATCACATAAATGTCATCAAGGTGCATGTCCACCTTGTCGTAAAATTTGTGGATTGGTTTATAAAAAATGCGATCACACTTGTAAAGCAATTTGTCACACTAAAGTATGGACAAAAGTTAAACCAAATGGAGTTGTTAAACCAATTGGACCAtgggaaaatgaaaaagaaagatggGAATACAAAACTTTTCCATGCCCTCCTTGTGAAGTTTCTGTTATGGTAACATGCCTTGGAAGCCATGAAACTTGTCCATGGCCTTGTTATAAAGCTATCCCAAATTCTTGTCTTAGAGAATGTGGTCAATTATTATCTTGCACAAATCATACatgtgaaaaaatttgtcaCAAATTACAATCAGCCGATGACgacgatgaaaataaatgtatggAATGTGAAAAACCATGTGCGTTTCCAAGACCTAAAGGTTGTACACATGCTTGTTCAGTACTTTGCCATCCTGCTCCATGTAAACCATGCAAACAGTTTGTAAAAGTTCCTTGTCACTGTGGCATTAATACTCTATTTATACGCTGCTTTGAACTCACTTCAGCTAGTCCTGAGAAGCGCGACGAACTTTTACAATGCGGAAATCAATGTCCACAAAACtatCCTTGTGGCCATCGATGCATTGATAATTGTCATTCTGGATCATGTCAAAAAGGAGAATCGtgcaataaaaaagttaaaatattttgcaaatgcAAGCGCATAAAGAAAGATTTTTCCTGCGTTCTAGTTCGAGCTGGAAAAGCTATTGTGGAATGTGACGATGTGTgtcagaaaaagaaagaagaattaGATCAAATtcgagaaatagaaagagagaaaaaaaggaaagaagaagaactgaaaaatcaaaaagaaattgagatgtttgaaaagaaatttaagcccaaaaaaagaggaaaagatcGTTATCACAACAAGGAACAATCAAATGAAAAGGATAATTCTTACAAGTGGTTATGGATTATTACCGTACTTATAGCTGCATTTTCTACGGTTGTGATATTAACATTCcaaacgaataattaa
- Protein Sequence
- MRKFRRAQAKNQISIQRFLEANNVESSSSDDDNEEVLETAVEKVLSNYQYEGGDINKIISYLTETFQSGGAVCLICISSVKKTDAIWSCTKCYTFLHLPCIQHWVRDSLSDKHEKGITPLWACPKCRAEYQEEEIPKKYLCFCEKTEDPTYQPWSIPHSCGNMCGKFLHPKCGHKCMLLCHPGPCPPCPKMVSSACFCGKEGPCPRRCNAKEWSCGEFCNKKYKTCEHRCIEKCHSGTCPPCTEKILTACNCKSKSELRKCNEAFWRCNKICGRRFLCNVHTCEEVCHKPGDCNTCPLERNRTCPCGKKKYAVSCKQQQVPTCGDTCGKLLDCGVHYCNMRCHTDRCGQCLEVVTKTCRCGSFSKEIACIKEFHCNKKCSQMRLCGRHLCNKKCCDCLIKNNFNVCEKVCDNALNCRKHKCPAPCHSGPCYPCPRTIVIQCRCGNSKITVPCGTVKKIKPPHCNKICKIPPICHHPKRESHKCHQGACPPCRKICGLVYKKCDHTCKAICHTKVWTKVKPNGVVKPIGPWENEKERWEYKTFPCPPCEVSVMVTCLGSHETCPWPCYKAIPNSCLRECGQLLSCTNHTCEKICHKLQSADDDDENKCMECEKPCAFPRPKGCTHACSVLCHPAPCKPCKQFVKVPCHCGINTLFIRCFELTSASPEKRDELLQCGNQCPQNYPCGHRCIDNCHSGSCQKGESCNKKVKIFCKCKRIKKDFSCVLVRAGKAIVECDDVCQKKKEELDQIREIEREKKRKEEELKNQKEIEMFEKKFKPKKRGKDRYHNKEQSNEKDNSYKWLWIITVLIAAFSTVVILTFQTNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470178;
- 90% Identity
- -
- 80% Identity
- -