Csis038532.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465099.1:4891147-4904620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.9e-05 0.0091 17.7 0.1 1 21 66 86 66 87 0.96 2 12 3.1 5.8e+02 2.6 0.8 1 10 95 104 95 115 0.77 3 12 0.016 2.9 9.8 6.0 1 22 191 212 191 215 0.91 4 12 0.025 4.7 9.1 11.1 1 23 220 243 220 243 0.97 5 12 0.0051 0.95 11.3 1.6 1 21 302 322 302 323 0.96 6 12 2 3.7e+02 3.1 8.0 1 23 331 354 331 354 0.95 7 12 1.6e-05 0.003 19.2 0.1 1 21 409 429 409 430 0.96 8 12 0.36 67 5.5 1.5 1 21 438 458 438 461 0.94 9 12 0.00046 0.085 14.6 0.7 1 21 531 551 531 552 0.96 10 12 0.067 13 7.8 3.7 1 23 560 583 560 583 0.96 11 12 0.0092 1.7 10.5 4.0 1 21 635 655 635 656 0.94 12 12 5e-05 0.0094 17.6 3.8 1 23 664 687 664 687 0.98
Sequence Information
- Coding Sequence
- ATGTCAGTCGTGCGGTCGCTCGTATCACAAAAAGTACAGCTTGATACGTCACTTGAGACACGAGTGCGGCGGAATAAGGAATTTCTCGTGCCATTTGTGCCCCGGGAGATATACGCGCAACGAAACGTTGAAGATACACCTTTTGAAGATACACAACGTTGGCGTACGCGACTCGTTatcaacgagaaaaaaaactatCCCTGCCCAAAATGTCCAGCCGGTTTTTCGGAAAAGGGCTCGCTAACGCGTCACCTGAGATACGAATGCGGACAAAATCCGCGCTTCGCGTGTCCTTATTGTGGTTGTCGATCGAAATGGACATCGAGTATCTACAGTCACGTGCGTTGTAGACACGCGGGTCTAAAGGTTTACTGCGTCGACGTGTGCGCCGATCAAAAATCCATGGCTTTTCGTAGCAGTAAAAATTTGTTGCGCGTCGTAAGGATCGAATCAATCGTAGAATTCGAAAAGAAGAAAGTACCGAGAAGATACCGCGGACGAAAAAAATCCACCGGTGCAACTAATGGCTCCGAGACTTATTGCGCAGGCGACGGCGATGGCTTTCGTAAATTCCGTTGTCACCGTTGCCCGAGTACATTTTCTTATCAACGTGGACTACGCCAGCATTTGAATTACTCCTGTCATAAACGACCGCGTTTTCAATGTCCTTATTGTAAACACAAAACGAAAATGAAACATAACTTACATCATCACATTAGACAGCAGCACAAGGGCAAAGAGGTTTACTGCATAGATTTACAAAAAGAGCAGATCGGATCCATCTTAGAATCCGGAAACAACGAAGTACCGAGTAGACGCCGCGGACGACCAAAATCCACAAGCGCACAAAACATCCTCGAGCCGCATTACGTAAGCGGCAACTACGCTGGACATTTTCGTCGATTTCGTTGTCCCCGTTGCCCGAGTACCTTTTCCTATCGGCAAGGGCTTCATCAGCATTTGAAATACTCCTGCAATCAACAACCACGATTTCAATGTCCTTATTGCGGCcacaaatcaaaattaaaatacaattcgCACCATCACGTGAGACAAAGACATAAGGGCAAAGAGGTTTACTGCATAGATTTGCAAAAAGAGCACGCGGATATTTTGTTTTGTCGCGGCGAGATCCTACGAATTCTTGACAACGCGACCGAGAAATATTTTGAGAATCGTTTAAAAGGCTGGCGTACTCGATTATCGATAGGTGAGAAAAAAAGCTATCCCTGCCCAAAATGTCCAACCGGTTTCTCGGAAAAGGGCTCGCTAACGCGTCACCTGAGATACGAATGCGGACAGAATCCGCGCTTCGCGTGTCCTTACTGCGCTTATCGCGCCAAGAGGGCATCGAGTATCTACAGTCACATTCGTTGTAAACACGCGGGTCTAAAGGTTTACTGCTTAGACGTGTGCgacaataaaaaatcttttgcaATTAGAAGCAAACATAATCGTTTGCAACTCGTCGAGGTCGAGGACATCTTGGCAGCAGGTGGCAGCGGCGCGTTACCCCGACGACGTGGACGATATCCGATGTCCTCGAGTAACGCGCCATACTGCGTCGGCGACGGCAACGGCTCGCGTAGATTTCGTTGTCCGCGTTGTCCTAGCAGTTTCTCATATCAACGAGGACTCCAGCAGCACTTGAAATACGCCTGCTATCAACGGCCGCGATTTCAGTGTCCTTACTGCCCGATGCGCTCGAAATATCGTCACGCCATTTATAATCATGTGAGACACATGCATAAAGGGGAAAACGTTTACTGCGTCGATTTGCAAGATGATCAGAGCATCGACAGCGGCAGCTTCAAATTCGTAAGCGTGGAAAGCTTGCTGAGCGTCGGTACGGATAAGGACGATAACGACGAAAGAAAATACGATTCCGCGAACAGCTCGTCGTACGCGTGCGAGCGTTGCCACAAGCATTACATGCGCTTGCAACATTTGCGACGTCACGTTAACTACGAGTGCGGCGTATTGCCGCGATTTCGTTGTTACTATTGCACGAAAAGATCAAAACTCAAGGATAATCTACGCAAGCATATCCGTAAGATTCATCGGTACGAGTGCATGAGGTATTTCGTCGACGGTGAACTGTTTGAAGAAGAACAGGAGGGTGCTTTGCTTTTTTGA
- Protein Sequence
- MSVVRSLVSQKVQLDTSLETRVRRNKEFLVPFVPREIYAQRNVEDTPFEDTQRWRTRLVINEKKNYPCPKCPAGFSEKGSLTRHLRYECGQNPRFACPYCGCRSKWTSSIYSHVRCRHAGLKVYCVDVCADQKSMAFRSSKNLLRVVRIESIVEFEKKKVPRRYRGRKKSTGATNGSETYCAGDGDGFRKFRCHRCPSTFSYQRGLRQHLNYSCHKRPRFQCPYCKHKTKMKHNLHHHIRQQHKGKEVYCIDLQKEQIGSILESGNNEVPSRRRGRPKSTSAQNILEPHYVSGNYAGHFRRFRCPRCPSTFSYRQGLHQHLKYSCNQQPRFQCPYCGHKSKLKYNSHHHVRQRHKGKEVYCIDLQKEHADILFCRGEILRILDNATEKYFENRLKGWRTRLSIGEKKSYPCPKCPTGFSEKGSLTRHLRYECGQNPRFACPYCAYRAKRASSIYSHIRCKHAGLKVYCLDVCDNKKSFAIRSKHNRLQLVEVEDILAAGGSGALPRRRGRYPMSSSNAPYCVGDGNGSRRFRCPRCPSSFSYQRGLQQHLKYACYQRPRFQCPYCPMRSKYRHAIYNHVRHMHKGENVYCVDLQDDQSIDSGSFKFVSVESLLSVGTDKDDNDERKYDSANSSSYACERCHKHYMRLQHLRRHVNYECGVLPRFRCYYCTKRSKLKDNLRKHIRKIHRYECMRYFVDGELFEEEQEGALLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -