Csis038510.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- lola
- Assembly
- GCA_949987625.1
- Location
- OX465099.1:4785723-4799374[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.9e-05 0.0073 18.0 0.9 1 22 100 121 100 121 0.95 2 18 4.5 8.4e+02 2.0 0.1 3 20 159 175 157 177 0.77 3 18 0.003 0.55 12.0 1.2 1 20 184 203 184 207 0.95 4 18 0.0017 0.31 12.8 0.7 3 22 355 374 353 374 0.93 5 18 0.00075 0.14 13.9 2.1 1 23 530 553 530 553 0.96 6 18 0.04 7.5 8.5 2.1 1 23 583 606 583 606 0.94 7 18 2.2 4.1e+02 3.0 2.1 2 21 613 632 613 633 0.94 8 18 0.0097 1.8 10.4 8.8 1 23 642 665 642 665 0.98 9 18 0.012 2.3 10.1 6.1 1 23 674 697 674 697 0.95 10 18 0.00093 0.17 13.6 0.7 1 20 706 725 706 727 0.95 11 18 0.0024 0.44 12.3 1.8 1 21 762 782 762 783 0.95 12 18 0.00012 0.023 16.4 3.5 1 23 791 814 791 814 0.98 13 18 0.0099 1.8 10.4 3.4 1 21 843 863 843 864 0.96 14 18 4.1 7.6e+02 2.2 2.3 1 21 872 892 872 895 0.84 15 18 6.3e-05 0.012 17.3 0.4 1 21 988 1008 988 1009 0.96 16 18 0.12 22 7.0 0.5 1 23 1017 1040 1017 1040 0.96 17 18 0.00029 0.054 15.2 0.2 1 21 1209 1229 1209 1230 0.95 18 18 0.00056 0.11 14.3 1.4 1 23 1238 1261 1238 1261 0.98
Sequence Information
- Coding Sequence
- ATGCGGTCGCGCGACGAAGAAGCCGGAAAATTacagatatttattattacactgCAAGGAGTGCGGCACTCAATTAAAATTCCAATGCGCGATATGCGGTCGTTTGTACGAGGTGTTCGAAAGTGCGCGCACTCACACCGCAATCGCGAAAACGGACGAAATGTGGCAAAAAGATTCGTCTCGTATCTTGCAAGTTCTGCAATGTACAAGACGCAAACAAACCAGCAGGTCAAAAGGCACATGAATCACCGTCATCCCGATCAGCAATACGATGGACCAAGCAGATTTTTAGAAAGTCACGTGTGCTCAATTTGCGGAAAATCTTACATGTATAAGAATTCTCTTAATCGTCATTTGAATACGTGCAAAATTTTAATGGTTAAAGTTGAACATCCGACGAGTTTTATCGACGATAGTGACGCGAAAAAACAATGGATAGAACAGCTAGTAGATTGCTGTCAAATCTTAATCGACTGTCCAAAGTGTGGAGAAAACATTCGAAATACGAGCGTCAGCAggcataaaaaaatatgcggCTACGAGTCTGTATTTCAATGTCCAATATGCAAAATTACCGTGACTTCGAAAAAACTTCTCGTCTCTCACATACTCTGTAAACATGATATCGAAAAAACGGACTGTAAAACAAAACGATACGATAGCAAAGTGAAAGACGAGCCCAAATGGAGCACCGACTCGATATGCAAAGAAAACGAGATAatcaaaaatcttaaaatcgaCGATATCCAAAGTAAAATACCGATGGAACAAACGTTTAAATGTACCCTCTGCGATTTCGAGATTCGAGCACGAGATTCGGGAACAAaagctgtcgatgaaaaaaaacaCCAAGACGATGATTTGATTAAATTAGAGGATACTTCAACGCGTCCCTGGTATTCAGgtagcaaaaaacaAATAAGGAGACAAAAGCAAAAATTGAAAGCCCAGATGTTTAAGAAAATGAATCGATTTTTTGACAAGCAAAAAGAAATTCATCCATTGGTCGAAGTAAAAGAAGAGATGCCGAAAGTGCAAATGCAAGATTTGCAAATGTCGATTTGTCAATTTTGCGGAAAGCGTTTTTACACTTATGCTAAATACGAGCATCATATGGCTACGGAATATGAAGAAGTCTACGACGTAGATGATAATGATTCAGATGAGTGTTTCATCGAAAATGGGATAgACGATGATGATTTGTACACATCAAATCCTTCGTACGTTAAAGAAGAGATAGACCTAGCGCCAGATGATCTTCATTACATAGAGATATCAGATAGTTCTGaCGATGCAACGAATGACAACGCTAGCGATATCGTTGCATTAAAAACCGTGCTCgtgaaaaatacaaatatagatAACAATTCTATGAAGAATGAAATAAGTCatgaaatgaaagaaagaatcgATCTGAACTGTAAGGAATGTTCCATCGCTTATGAAAATTCTCCGCTACCGTTGGAAAACAAATGCGTAAAGTGCGGCGGATTTTTGTGCTTTCGATGCAAAGCCTGCAGCGAGAATTTCGAGGAACTGGGTCAGTGCCTTAATCACCAAAACAAAATTTGTTACAGCTCAAGTGCCTTCAAATGTAACGAGTGCAATTACGTAACATACGTTAAACGCCAGCTGACGCGTCACGTTAAGCTTAAACACACTTACGTGATGTGCTCCAAGTGCGATCAGCTGTTCATGCAGATAAGCATATACAACCATCGTAAGTTTTGCGGCAAGGAGCCGCGCTTCAAGTGCAACGAGTGCCCTTTCGTCACCCATTTCGAGTACAATTTCCGTCTTCACATGGCGGCCAAGCACACCAATCACGTTTATCCGAAATGTAGCACCTGCCAAAGGATGTACCTAAGCGATAAACATTTGGCGCGTCATCGCAAAAGCGGATGCAACAGGCGCAAGGGTTTCTTCAAGTGCGATCATTGTCAATACGTTTGCCGTCACAGGGTCACGATGGTCAAGCACATGAAAACACGTCACGTCGAATTGTATCCCACGACGAAATTTTCATGCGACATTTGCGACGAAAAGTTTCATTATCTCGGACACTTGAGACATCATGAGAAAAATCGCCATCCGCATATATACAAGCAAAAGGTTTTCACCTGTAAAAAATGCGGCATTGATTATTTCACTTTGAGCCACTTGAAGCTACATATCGAGCTTAAGAATCAGCTGAATAACGTAGCAACAACTTGGCCTCATCGTCGCACGAAGAGCGTTTACGAGGCGGGTCAATGCTTCGGCGACAACGCGACTAGCGAAAAATTTCCCTGCAACAATTGCACGAGCGTCTTCAGCCGTAAGCGCAATTTGTACTATCATCAAAAGTACGAGTGCGGACAACCGCCGAGATTTCAATGTCCTTATTGCCGTTATCGTACGAAACATCAGTCGAACGTTCGGGCTCACGTGAGACGGATGCACGCCGGTCGCGAGGTCTACTTCATCGACCACGAAGACGATCCATTAAAACCAACGCGAAGACAGCGCCGAACGAGTACTCAAACTTACAATTGCCTAAACTGTCCATCGGCCTTTTCATCGAGACATTCGTTGCGTCATCATCTTAGGCACGAGTGTTGTCGCGATCCCCAATACTGTTGCCCTTATTGTCCTTATCGCGGCAAGTGGAAACCCAACGTTAAGAGGCACGTTGTGCACCTTCACAAAAATAAACCGGTAAACGTTATCAACGTCGCCATGGATCGACAAACGAACGATTCGGCAACATGGaggcagcaacagcaacaacagcaacaacatcaTCATCATCAGCAGCATCAATCGTCGAACCCAACAAAACCAttgtgtcgtcgtcgtcgtcgtcgtcgcagcCTGATAACAACCGCCGAGCATCGGGAGCTCATCTCGGAGATAATCGAATTACCTATACCCTGCGACAGACCCGACGATTTGACGACGTATCGCGGAACACCGAAAAACTTCCAATGCCCAAAGTGCCCGAAACGTTTCTCGGCAAAGAGCAGCGTCGTACAGCATATGAAGTACGATTGCAACAGATTGCCAAGATTCGCCTGTCCTTATTGCAGCATGCGAAGCAAATGGCCTTTCAGCCTTTACAAACACGTGCGTAAGGTACATCCCGGATTTCGGGTGTTCTGCAACGATTTGTTTAGAAACGAGACGATTCACTTTACTTATTTGAAAGGTTTATCGACGCATATTAAATACGAATGTGGCCAGCAGCCGATATACAAGTGTCCTTCTTGCGATCACATGAGCAAATGGATGAACAACGTTTATGAAGACGTGCGCACGAAGCACGAGGGCGAGGAAGTCCGTTACGATGTTAATTGtAAACCAATCTCAACTATTAAACCAACATCGTCAACAAAACTTTTGGACGCTTACGTCAAACGAGAATTTCCGTTGCACCAAGTGCTCGAGATCTTTCAGCGTTTACAACAGCCTTTATCGACACTCGCGTTACGAGTGCGGCAAAGAACTGAGATTCGGCTGCTGTTATTGTCCCTACGTCACCAAACATACCACCAGCGTTTATCAACACATCCAGTGCTCGCGACGTCGCGGTTTTACCCAAGAAATCATCATCATCGCATCAGAGTCGGGCATCAAGAGGAACGTTATCCATGCCCGAATTGCAACAAAAGCTACGGTACTAGAAGCGCGATGAACGCCCATTATAAGTACGATTGTGGAAAACCGCCGAGATTTCAATGCCCTTACTGCGGCAAACTCAACCGTAAGAAGTTCAATTTGCAGGATCACATTAAGCGCATTCATCCGAATCGGCCGATTATTTGCAACACGCGTTTTtga
- Protein Sequence
- MRSRDEEAGKLQIFIITLQGVRHSIKIPMRDMRSFVRGVRKCAHSHRNRENGRNVAKRFVSYLASSAMYKTQTNQQVKRHMNHRHPDQQYDGPSRFLESHVCSICGKSYMYKNSLNRHLNTCKILMVKVEHPTSFIDDSDAKKQWIEQLVDCCQILIDCPKCGENIRNTSVSRHKKICGYESVFQCPICKITVTSKKLLVSHILCKHDIEKTDCKTKRYDSKVKDEPKWSTDSICKENEIIKNLKIDDIQSKIPMEQTFKCTLCDFEIRARDSGTKAVDEKKHQDDDLIKLEDTSTRPWYSGSKKQIRRQKQKLKAQMFKKMNRFFDKQKEIHPLVEVKEEMPKVQMQDLQMSICQFCGKRFYTYAKYEHHMATEYEEVYDVDDNDSDECFIENGIDDDDLYTSNPSYVKEEIDLAPDDLHYIEISDSSDDATNDNASDIVALKTVLVKNTNIDNNSMKNEISHEMKERIDLNCKECSIAYENSPLPLENKCVKCGGFLCFRCKACSENFEELGQCLNHQNKICYSSSAFKCNECNYVTYVKRQLTRHVKLKHTYVMCSKCDQLFMQISIYNHRKFCGKEPRFKCNECPFVTHFEYNFRLHMAAKHTNHVYPKCSTCQRMYLSDKHLARHRKSGCNRRKGFFKCDHCQYVCRHRVTMVKHMKTRHVELYPTTKFSCDICDEKFHYLGHLRHHEKNRHPHIYKQKVFTCKKCGIDYFTLSHLKLHIELKNQLNNVATTWPHRRTKSVYEAGQCFGDNATSEKFPCNNCTSVFSRKRNLYYHQKYECGQPPRFQCPYCRYRTKHQSNVRAHVRRMHAGREVYFIDHEDDPLKPTRRQRRTSTQTYNCLNCPSAFSSRHSLRHHLRHECCRDPQYCCPYCPYRGKWKPNVKRHVVHLHKNKPVNVINVAMDRQTNDSATWRQQQQQQQQHHHHQQHQSSNPTKPLCRRRRRRRSLITTAEHRELISEIIELPIPCDRPDDLTTYRGTPKNFQCPKCPKRFSAKSSVVQHMKYDCNRLPRFACPYCSMRSKWPFSLYKHVRKVHPGFRVFCNDLFRNETIHFTYLKGLSTHIKYECGQQPIYKCPSCDHMSKWMNNVYEDVRTKHEGEEVRYDVNCKPISTIKPTSSTKLLDAYVKREFPLHQVLEIFQRLQQPLSTLALRVRQRTEIRLLLLSLRHQTYHQRLSTHPVLATSRFYPRNHHHRIRVGHQEERYPCPNCNKSYGTRSAMNAHYKYDCGKPPRFQCPYCGKLNRKKFNLQDHIKRIHPNRPIICNTRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -