Csis025325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chalcis sispes
Gene Symbol
-
Assembly
GCA_949987625.1
Location
OX465097.1:13664684-13669122[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.032 5.9 8.8 0.5 1 23 510 532 510 532 0.85
2 16 2.9 5.5e+02 2.6 5.7 1 20 538 557 538 559 0.88
3 16 1.8 3.4e+02 3.3 0.7 3 23 566 586 565 586 0.97
4 16 0.00034 0.063 15.0 1.6 3 23 595 616 594 616 0.97
5 16 0.04 7.5 8.5 4.4 1 23 623 646 623 646 0.96
6 16 0.00027 0.05 15.3 1.1 1 23 652 675 652 675 0.94
7 16 5.3e-07 9.9e-05 23.8 2.3 2 23 709 730 708 730 0.97
8 16 8.3e-06 0.0015 20.1 0.2 1 23 736 758 736 758 0.99
9 16 0.00081 0.15 13.8 3.1 2 23 770 792 769 792 0.95
10 16 0.021 4 9.3 2.3 1 23 798 821 798 821 0.95
11 16 0.014 2.5 10.0 2.9 2 23 843 865 842 865 0.95
12 16 0.0017 0.31 12.8 1.2 2 23 872 894 871 894 0.96
13 16 0.0011 0.21 13.3 5.1 3 23 903 923 903 923 0.99
14 16 0.0073 1.4 10.8 2.5 1 23 929 952 929 952 0.95
15 16 0.32 60 5.6 4.3 2 23 959 980 958 980 0.96
16 16 0.0046 0.86 11.4 2.8 1 23 986 1008 986 1008 0.98

Sequence Information

Coding Sequence
ATGGCTTTAAATTTAGAGGAAACAAAAAACATTGACGTATGTACCGATTCTGCAGTGATAGATGCATCTACAGAAGATTTAGATATAAACTGTGTAAATACCGTACCATTTACAGAAAAAGtatgtaaagaaaatattatgataGAATTTTCAgatcAAGACAAACCACAAGTAAATGTTAAAATGAATCAATCAAGTCATGATAAGTCATCTGACAACGAAGATCACAATTACAGTTTAAAAGTTCCATTGGTTGATATATTTAGTGAAAAGGGAGCTCAAATGAGATTGAGTCAACAAATGCAACATTTAGAAGATATTAGTGAACATGATAGTCTATCAACGCAAATGTTTGAAGAatcattaaaagtaaataataatttagataatataaatacaaaatctgAATCAGAAGACTTTAATTATTCTGAAACAAATGATAGCTATAACGATGGAAATGAATCAATTGAAGAATTTGATCCAGATAATCCACAAGAATCTATTGAAAATGAAGTGAACAAAAATTTAGTATCTAATGTTATTACAAATGAAAATTCAGAGGAATTTAAGAAAGCTATTCATAAATATGATGAATCGAATtcatctattaatattaaaaAACTTCCGAATTCTAAGGCGTTAAATCAATCACCAAAAATTCCCAATATTCTGAAGAGAAAGCTATCAAGTGAAGATAGTAATGATAATGCTAACAAAGTAAATCTTCAAAAGttaaatatagatttaaaagatataaaaattcctaaattaaattttcaagataCTGCAAACATAAAAACAGAAGAAAATGGTGTAATATATGTTACAGCTAAAGGTTCTAAACCTAATGAAatgcttttaataaaagtaaaaaaaatggataaaacaACAGAAAGAAAAGGAGACAAAGCactgggaaaaaaaaaagcagattcAGGTtcaatgcataaaatattttcaagttatGAAAATACTAAAACAAAAGGTAGTTATATAGATGAACAAATAGAACAATACAAAAAAAGGAGAGTTCAAGTTTTAGGAGAAACTGCTAAAATATCAGATATCAATTTAGATGAGGAAGAAGCAAATATTCGAGTTGTAAGCAAAGATACTTCAAATGAAGAAGatttaaatcaagaaaataaaaactttgaatttttagaaataaatgaagaaacaaGTAATGTTTCAGAAGAATTCAATGAAATAACTACTGACACATTAGAATGTACAATAAATTCAGAAAAATCACAGCATAAATGGAAAGATGTGAAGAAAAATGAAGTTAATAAAGATACAGCAGATGACTGTATCGATAAATTAAGAGCTATTTTGAGACAAAAAGATGAATATATATGCgagttcataaattatttaaaacagcGAAGTATTGTAGTATCACgtttaaaagaagaagatattATTGCATTgtatgaagtaaaaaataatgtgattTTAGAGAGAATACCAATCTCTGCGCAAAATACAGCGGAAGAAATAGACCCTTTTGAATTTAAAGAAAGTTATCAATGTGATTTTTGTGATCAATCTTTTCCTACTAGAGAAATGGAATTTGAGCACGCTAAAATTCATGATTTCAAATTAATGCACTACTGTGAAGATTGTAAACAAGAATTCACTACACATAAAGCAAAATGTACTCATAATAATACATGTGTACAAAAATTATTGTGCAAATATTGTGATGCCATACTAGaatcaaaaggaaaaaaaagacagCATGAGCAAAAGCACTGTGACGAGCAATATGGGCAACTTTGTGATTTATGtggagaaaaatttaaacatcaaGGAACTTTAGATCAACATATAAAATCTCGTCATATGGAATTAGAAAAGATTCATAAATGTCCTCAGTGTTCTAAAAAGTTTGCATTTAGGACAAAATTAACTTTTCACTTAAAATCAGTGCATACAACTAGTAGAGCATATTTATGTGAAGATTGTGGATCTGATTTTAAGAATCCTGCAAGTTTAAGACATCATAGAATACGAAAACatcaatcaataaatattaaaaaagaatgttcTATTTGCCATAAACTGATCCCTGTTTATAGTATGTCAAAACACATGCATACGCATAAAGCATATTCAATTCAATGTCCTCATTgtgataaaatgtttaaaaatacttcAACTCTTAAACAACATGTAAGAATTCATGAAGATCAAAGACAATATAAATGTGATATGTGTGGTGTTGGATTCAATAGACGGGATGGTTTAAGACTACATTTGAAAGTACATCAAAAAACAGACAGTAGAGGATTGAAAGAATGCTCTTGTCAAGTTTGTGGTGAAAAATTTCCTAATCATTCAACACTTGTAATTCATAGAAATCGAACTCATAAGGATGGTAGAAATTATACTTGTCACATTTGTAATAGATCTATGATATCTACTAGATCACTAGAATGGCACTTATCACATATACATAATGAATCAATGCCAGGTATAATGAAAGATGAATCTAGTATAGATGCTGAAACAAAAAGAGTGTCCTGCTATCattgtaataaaacatttaaaactgAAATGATACTGAGGACACATGTAAGAaatacacacacaaaaaaaGAGCCTATGAAGTGCTTAGATTGTGAATTAATGTTCACGTCTGAAGTTCGTCTAAAACATCATATGATGGTAACACATAATCGATTAGAAGGAACTTTAGGATGTCCACATTGTCATAAAAGATTTGTCAATCAGTTAAGACTGAAAACTCATATGATTTCTCATTCAGATGAAAGACCACATACATGTGACCTTTGTGGTTTTATGTTAAAGactaaaatacaattaataaaacataaacaGAATAGGCACAGTAATGAAAGACCATTGCAATGTAAATATTGTTCATGGAGATGCAAACAAGTCAGTGCATTAGTTTGTCATGAAAGAACTCATACAAATGAAAGGCCTTACAGTTGTAGTGTgtgtaaacaaaaattcaaatatttaggtgataaaaataaacatgaaagAAGACATGAGAGTCTTGGAGGATCAGGATTTAAGAGAATTGTTACTGGAAGAAATACAAATAAAGTTaatagaataaaagaagaagattcAACTGAACAGGACTCTGAACAAGAGCATGAAGAATATGATCAAGAAATGGATGAGTATGATGAACAAGTATCAGGAGAAATTGAATCTTTTGATGAtacaaaaatgattaaatttgagTCAGATGAAATTATACCTGAAGAAACGGATGTATCATTTAAACAAatgtatGTGGAAGATACATCACAAGATACCAATGATACAACTGAAGTTGTAATGGACATGGAAGAAACAACAGTTTACACAGAAGAAGTAACAGCAGATCCTattgaatcaaatataattacaaacaaTATTTTAGATGAACATATACTACAGCCAGGAACAGTTGTCCATCTTCAACAAGAAGATGAAACGggaaaaattcaagtaatacCAGTCATGCTATCTCTACCAGATTTAACCGATGCTGCTTCTGAAGTTAATCTAGCAGCTACttcaataatgtataataattaa
Protein Sequence
MALNLEETKNIDVCTDSAVIDASTEDLDINCVNTVPFTEKVCKENIMIEFSDQDKPQVNVKMNQSSHDKSSDNEDHNYSLKVPLVDIFSEKGAQMRLSQQMQHLEDISEHDSLSTQMFEESLKVNNNLDNINTKSESEDFNYSETNDSYNDGNESIEEFDPDNPQESIENEVNKNLVSNVITNENSEEFKKAIHKYDESNSSINIKKLPNSKALNQSPKIPNILKRKLSSEDSNDNANKVNLQKLNIDLKDIKIPKLNFQDTANIKTEENGVIYVTAKGSKPNEMLLIKVKKMDKTTERKGDKALGKKKADSGSMHKIFSSYENTKTKGSYIDEQIEQYKKRRVQVLGETAKISDINLDEEEANIRVVSKDTSNEEDLNQENKNFEFLEINEETSNVSEEFNEITTDTLECTINSEKSQHKWKDVKKNEVNKDTADDCIDKLRAILRQKDEYICEFINYLKQRSIVVSRLKEEDIIALYEVKNNVILERIPISAQNTAEEIDPFEFKESYQCDFCDQSFPTREMEFEHAKIHDFKLMHYCEDCKQEFTTHKAKCTHNNTCVQKLLCKYCDAILESKGKKRQHEQKHCDEQYGQLCDLCGEKFKHQGTLDQHIKSRHMELEKIHKCPQCSKKFAFRTKLTFHLKSVHTTSRAYLCEDCGSDFKNPASLRHHRIRKHQSINIKKECSICHKLIPVYSMSKHMHTHKAYSIQCPHCDKMFKNTSTLKQHVRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHQKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLSHIHNESMPGIMKDESSIDAETKRVSCYHCNKTFKTEMILRTHVRNTHTKKEPMKCLDCELMFTSEVRLKHHMMVTHNRLEGTLGCPHCHKRFVNQLRLKTHMISHSDERPHTCDLCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKVNRIKEEDSTEQDSEQEHEEYDQEMDEYDEQVSGEIESFDDTKMIKFESDEIIPEETDVSFKQMYVEDTSQDTNDTTEVVMDMEETTVYTEEVTADPIESNIITNNILDEHILQPGTVVHLQQEDETGKIQVIPVMLSLPDLTDAASEVNLAATSIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-