Csis007773.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465094.1:76765734-76768241[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5 2.8e+02 3.5 1.1 1 23 98 121 98 121 0.94 2 17 3.4 6.3e+02 2.4 0.5 1 21 151 171 151 174 0.80 3 17 0.048 8.9 8.2 2.4 2 23 240 262 240 262 0.97 4 17 8.9 1.7e+03 1.1 3.2 2 23 289 311 288 311 0.94 5 17 0.041 7.6 8.5 1.3 2 23 387 409 387 409 0.96 6 17 0.64 1.2e+02 4.7 0.1 1 23 436 459 436 459 0.94 7 17 1.2 2.2e+02 3.9 6.3 1 23 474 497 474 497 0.97 8 17 0.37 68 5.5 0.9 1 23 507 530 507 530 0.94 9 17 0.11 21 7.1 2.8 1 23 544 566 544 566 0.98 10 17 0.012 2.2 10.1 1.6 1 23 579 602 579 602 0.97 11 17 0.0076 1.4 10.7 2.1 1 23 619 642 619 642 0.95 12 17 5.1e-06 0.00094 20.8 1.3 1 23 648 671 648 671 0.95 13 17 0.0004 0.075 14.8 1.2 3 23 678 699 676 699 0.93 14 17 0.0013 0.25 13.2 0.3 1 23 704 727 704 727 0.97 15 17 1.1e-07 2.1e-05 25.9 0.4 2 23 734 755 734 755 0.97 16 17 1.6e-05 0.0031 19.1 0.4 1 23 761 783 761 783 0.98 17 17 5e-05 0.0094 17.6 2.2 1 23 789 811 789 811 0.97
Sequence Information
- Coding Sequence
- ATGATCAATTCGCAAGGTAAAATTTTCCACGCAACTTCGGCACCCATGGTTGAGGTTAAGCTTGAACCGTCCGAGCTCCTAATTGCCAATGATTTTGAGGAAGCTAACATCAACGACATCGATTCTGAATCTACTGGCGGTACAGCACGCGAGTCTCTTACCGTCGAAGAACCTACTATCGCTGAAGTATCTGTCATCGCCGAAGAGTCTGTCACCGCTGAAGAGTCTACTACTGCCTCTATTGCAAATATCGTTTCGGAAATGTCTCAAATGAATAAAAGTGTTGTTGTTTTCATGTGCAGATCGTGCAAGCTTTATTTCCCCGTCAGACACATGCTCGTGGAGCATAACGAGACAGTTCACGGCAATCAGAAAAAAGATAGTAGCAACTCTTCTACCGAAGAGGATAAAATTCTTCACAATGGTTATCACAAAGTCAAAACAGGAGAATATGTGTGCAATTATTGTTTGTATAGGTCTTACGATCGTGCTACCATCTCTTTACATGTTAGTGATAAACACGGCGACATCATTGAAGTGAAATCACAGCCCGCAGAAACCGATCTCGAGGCCCAGGATGAGCCTAAAATTGAAATATCCGAAGAGGAGGACGAAGACTTCTGGCCGATGGAGGTTGTTGAAGAAGAGTTagaagaagagaaaatagaACAGCCAACGCAATTAAAAAACTCTGATTCAGCAGACAATAAGATGCGCACCTGTCCTTATTGTCCTTTCGAGACGGCGAAAAATTCTACCTTCCATTCACACGTAAAACGCAGACATCGCGAAAAGTGGCTCAAATCCATTGCCCAGAGAGTTGCAGCGCTTCAGCCAGTAAGAACCGCTAGCACAACTGAATTACACTGTCAGTTTTGTtcttttaaatcggttaaatcTTCGACTATGGAACTACACGTCCAACGTAAACATGGTATGCGTGAAACACCGGAACCTTCCAACTCTTTTGCTAAAGTAGAAAACTTTGTGGTGGTGAACGAGTTCGAAGGCGAGGACAACGGTATTATTATTGAAGAATTACAATCAATAAAGGACGACATTTTAATGGAAGAAGAAATTGGAAATACGACAGAAACGGTAAAGTCTGTAGAAAAAGTAGAAGTAAAAAGTTCGGTACGATCTACGAAAAAAATGCGTAAGTGTCCTCTGTGTCCTTTCGAGTCTTCCGTCAACTCAACCTTGCATTCGCACATTACTCGACGGCATCGTAACTCTGCCCGTCGCGGTCACGAATCTTCTCAATTAAGTGGTCGTAGACAACCTAACGCACAATTATGCACAGGTTATGCATGTAATTATTGTACCTTTGTTGCTGCCACTGTTGCTAGCATCAATTCACACACCAACCGCGAGCATCCCGGTCAAAGGCAACCCATAAAAGAAGTACCCGTGAACGAATACGATTGCGATCAGTGTGATTTCAAGTGTCGTATTCGTAAAAATATGCAGCTCCACGTAAAGAGGTGTCACACCACTCAGGCCAATGCCGAAGGCATGTTTGCTTGTCATGTTTGCTCTTATGAGACCCTCTCGCGGATGGGTTTACAACGTCATATCTCTATTAAGCACAACAAGCGCCGTGACAACAAGTCCCAAACGAGTATCTGCTACGAGTGCGAGCAGTGCGATTTCAAATGCTACAACGCTAAGTTAATGGATTGGCACAAGAGGCAGCACACCGCTCAGCCGAACGCCGAGGACGACGGTAATAGTTACTTCTGTAACGACTGTGACTTCTCCACGTGGACCAAGGGTCAATTATATTCACACATCAAACGCAGACATAAAGACAGTGATGGTCGTGACCCAGAAACTGATCATCTCGATTCAATGTTTGCCTGTGAACAATGTGATTATACCAGCAAGAATAAACATCTGATGAAGGTTCACGTAATACGTAAACACACCAACGAGTACAACCACGAGTGCGAGATTTGCGGGAAGAAATATAAAGTCAAGGCCGATCTCACTAATCACATAAGGTTCCAACACAGGGAGCAACCGATCATCTGCGACGTCTGCGGTAAAACATGTCGAAACAGTAACCTATTGTACCTGCATCAGAAATTCGCGCACTACAAGCCCGAGTTCGAGTGTCCAATCTGTCACAGACGAATGGTTAGTCAAGCCAATCTCGATGACCACATAATTAAGCAGCACGAGCAAAGAGAAGACGCGGTGTGCGAAGAGTGTGGGAAGACTTTCACGAGGCAGGCAAGGCTCAAAATACACATGAGAATACACACGGGCATCAAACCCTATACCTGTAAAGTTTGCCTCAAAGCATTTGCGAGAAAGAACGGACTTAGGCAACATTTGTTGATACACACCGGACAAAAGCCTTACATTTGTGACATCTGCGGTAAGAGTTTCACCCAAAAGACAGGACTTATATGTCATAGAAAGTCTCATCCTGGTTCGCATCCACCCTTACCTAGAGTCACTATAGATCATGTGCTTTCCGATTTACTGAACGAGGAATCCTGA
- Protein Sequence
- MINSQGKIFHATSAPMVEVKLEPSELLIANDFEEANINDIDSESTGGTARESLTVEEPTIAEVSVIAEESVTAEESTTASIANIVSEMSQMNKSVVVFMCRSCKLYFPVRHMLVEHNETVHGNQKKDSSNSSTEEDKILHNGYHKVKTGEYVCNYCLYRSYDRATISLHVSDKHGDIIEVKSQPAETDLEAQDEPKIEISEEEDEDFWPMEVVEEELEEEKIEQPTQLKNSDSADNKMRTCPYCPFETAKNSTFHSHVKRRHREKWLKSIAQRVAALQPVRTASTTELHCQFCSFKSVKSSTMELHVQRKHGMRETPEPSNSFAKVENFVVVNEFEGEDNGIIIEELQSIKDDILMEEEIGNTTETVKSVEKVEVKSSVRSTKKMRKCPLCPFESSVNSTLHSHITRRHRNSARRGHESSQLSGRRQPNAQLCTGYACNYCTFVAATVASINSHTNREHPGQRQPIKEVPVNEYDCDQCDFKCRIRKNMQLHVKRCHTTQANAEGMFACHVCSYETLSRMGLQRHISIKHNKRRDNKSQTSICYECEQCDFKCYNAKLMDWHKRQHTAQPNAEDDGNSYFCNDCDFSTWTKGQLYSHIKRRHKDSDGRDPETDHLDSMFACEQCDYTSKNKHLMKVHVIRKHTNEYNHECEICGKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHIIKQHEQREDAVCEECGKTFTRQARLKIHMRIHTGIKPYTCKVCLKAFARKNGLRQHLLIHTGQKPYICDICGKSFTQKTGLICHRKSHPGSHPPLPRVTIDHVLSDLLNEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -