Csis017573.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465096.1:12686446-12689920[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.051 9.5 8.2 0.2 3 21 8 27 6 28 0.85 2 14 1.3 2.4e+02 3.7 0.0 2 20 34 52 33 53 0.92 3 14 0.18 33 6.5 0.2 1 12 235 246 235 255 0.89 4 14 0.083 16 7.5 0.7 1 20 377 396 377 398 0.94 5 14 2.2e-06 0.00041 21.9 0.5 2 23 403 424 403 424 0.98 6 14 0.028 5.3 9.0 2.4 1 23 435 457 435 457 0.95 7 14 0.48 90 5.1 0.1 1 23 476 497 476 497 0.89 8 14 0.0085 1.6 10.6 0.1 2 23 503 524 502 524 0.95 9 14 5e-05 0.0094 17.6 4.8 1 23 578 600 578 600 0.99 10 14 6.1e-06 0.0011 20.5 5.0 1 23 606 628 606 628 0.98 11 14 0.00013 0.025 16.3 4.6 1 23 634 656 634 656 0.98 12 14 1.5e-06 0.00029 22.4 0.8 1 23 662 684 662 684 0.98 13 14 6.9e-05 0.013 17.2 0.2 1 23 688 710 688 710 0.99 14 14 0.00026 0.049 15.3 0.1 1 23 718 740 718 740 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCGATAAGTTTGATGTGTCCTATGTGTTGCGGAGAGATTTTCAATAATTCAGAATCTTTAAAGTACCATTTGCTAAGCATGACTGATAATTTATACTGTCCAGGATGTTCATTAAGGACTTATTCAGTAGCTGCATTAATTCAACATTTAGATTGTTGCGGAAAAGAACAAGAACAAGAAGAAAACCAAAATAATTCAGAATTAAAttctgaaatattaaataatactgATAGTACAAAAGAAACGCAAGACATTTTAATGGATGAAAATGGTGATGGAATTAATGATAGTTTTTTAGCAACTGTCAATGAAGAAGGAATAATGATTGTTGGAGAAGGTAGAACTATACAAGTAGATGAAAATggtgATATTCaagttttggataaaaatagttcaataaatcaaaaagaaacACTTTCTATTGCAACTTGTGAAGAAAATGTAATGgatgcagaaaaagaaaatcaagttACTTTGTcatctaataaattaaattgtagtTTTTCAAATgcttccttaaaaaaaaatgaatccatGAAAGTTATATCTAATGATTCTGAGTTATTACAAGATGAtcgtacaataattaatttaacccAGGATGATGATGTGCAATTTGAAAACAATGATAtacttaacattaaaaaagaatcaGATCAAACAATGGAAAAAGAACAggaTGAAACTGAAGTTATGTATAGCTGCAGTACCTGTGGTATGAGTTTTAACTCTGTATTAGAACATATAAAAGAATATCATGATGGGCAAGAAGTTGTATTAGAAATGGCTGAACAACaattaaatgaaatagaaaCAAGCACATTGGAAACACAACTTCCAACTTTTGCTATTTCAAGTGCACCTGTGCAAACAACAAATAGCAATGTTCAAACAAATGCAACACCAAAACAAAGGCAATCATTGAATACTTTAAGAACTGAAGAATGTATTGACAATGACGGAAGAGTATATACAAGAAAAGTGGTACAAATTGAAAGATTTTGGGACCGAACTCCAGTTACTTTGTCATCTACAAAAGCTCcaatgattgaaaaatttttctctaatgTAGAAGGAGTGAAGGTTAGAGATAAAAGTGTAACAGTAGCTCCAACTCGAATGTACAGATGCAATCAATGTTTAGAACAATTTGCTAAATTAGGAGATTTTCGTATTCACGTATGCCTTCAAGGAAATAATCGATGCGATCAATGCGATCAAACATTTGCAACAGCGAAAGCATTACAGATACATATGAAAACGCATGAAAGTAGCGACTTCCCTTcacagaaaatatttttgtgcaCGGTATGTGGCACTGAATTTCTAACTCACAAGAGTTTAAGATTACATTCGAGAATGCATGCTCCTGTTAGGGCGCGTCATGTTGAAGCACCTGAAGGAACAGAAGAAGAGACATTTGATTGTGATGAGTGtggATTGACACTCTCGGAATCGTATAGAGCGGCACATATGGCTTTACACGCTGGTAATTCAGTTACATGTACTGTGTGCAATCGGAAATTTGATTCGGATGAAAGTTTATCGATGCATGCAGCAGTTCATTCAGAAGTAAATGTAAATCCTATTGGAAGTTTGAACGATACCAATGTAAACACAGTTTCTCAGGATGCGATTGATTCTTTATTTACTTCTACTGGCACCACTTCAACTGTGACGACTAATACAACAACAGATTCGAGCGATATACAAAATCAAAAACCTTACCAGTGTCAACATTGTGGTCGAAGATTTACGAGACCACACGAAAAAGTTAAACACGAAAGGATCCATACCGGTGAAAAGCCACATTCATGTGAgGTGTGCGGTAAAAAGTTCCGTGTATCGTATTGTCTGACCTTACACATGCGAACTCATACGGGGGTACGGCCTTACGAGTGCCAGCATTGCGGCAAACGCTTTAAAGCTTCATCGGTATACAATCATCATTTGCTTACACACGGCGACGAGCGCGCTTATACTTGTCCCTACTGCCCAAAGACGTTCAAGACGCGGGTGCAACTTGCCGGCCATAAAAACAGTCACACTAAGCCGTTTCGTTGCACCGAATGTTCAAGACCGTTTGCTTCGTTATACGCAGCGCGCGCTCATATCAAGACTCACCAGACGGACAATAATCTTAAATTCAGCTGTGATGTTTGTGGTGCCTCATACGGCCGAGCGTTTGCTCTCAAGGATCACTTGAAGCAGCACGAAGCTGAAAATGGTGTCATTATATTGCCAAATGAACCTTCGCACCAAGAGAAAGTCGAGGTAGTCAACAGTTTCATTTTACAGGAGGACGAAGAACACGATGATGATGTCTTCATCGTACCTTCGCCTCCTACAACTGAAGTGATGCACACCGATTTTGAAGATCACGAGTAG
- Protein Sequence
- MGSISLMCPMCCGEIFNNSESLKYHLLSMTDNLYCPGCSLRTYSVAALIQHLDCCGKEQEQEENQNNSELNSEILNNTDSTKETQDILMDENGDGINDSFLATVNEEGIMIVGEGRTIQVDENGDIQVLDKNSSINQKETLSIATCEENVMDAEKENQVTLSSNKLNCSFSNASLKKNESMKVISNDSELLQDDRTIINLTQDDDVQFENNDILNIKKESDQTMEKEQDETEVMYSCSTCGMSFNSVLEHIKEYHDGQEVVLEMAEQQLNEIETSTLETQLPTFAISSAPVQTTNSNVQTNATPKQRQSLNTLRTEECIDNDGRVYTRKVVQIERFWDRTPVTLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLGDFRIHVCLQGNNRCDQCDQTFATAKALQIHMKTHESSDFPSQKIFLCTVCGTEFLTHKSLRLHSRMHAPVRARHVEAPEGTEEETFDCDECGLTLSESYRAAHMALHAGNSVTCTVCNRKFDSDESLSMHAAVHSEVNVNPIGSLNDTNVNTVSQDAIDSLFTSTGTTSTVTTNTTTDSSDIQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIKTHQTDNNLKFSCDVCGASYGRAFALKDHLKQHEAENGVIILPNEPSHQEKVEVVNSFILQEDEEHDDDVFIVPSPPTTEVMHTDFEDHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -