Basic Information

Insect: Chalcis sispes
Gene Symbol: ich
Assembly: GCA_949987625.1
Location: OX465096.1:7003202-7012987[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.8e-08 1.5e-05 26.4 2.0 1 23 382 404 382 404 0.98

2 8 1.2e-05 0.0022 19.6 2.8 1 23 410 432 410 432 0.98

3 8 1.3e-06 0.00024 22.6 0.3 2 23 441 462 441 462 0.98

4 8 7.8e-06 0.0014 20.2 0.1 1 23 468 490 468 490 0.98

5 8 1.3e-07 2.5e-05 25.7 3.0 1 23 496 518 496 518 0.98

6 8 2.8e-06 0.00053 21.6 2.1 1 23 524 546 524 546 0.98

7 8 4.8e-05 0.009 17.7 7.5 1 23 552 574 552 574 0.98

8 8 0.0002 0.038 15.7 1.0 1 21 580 600 580 601 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.8e-08	1.5e-05	26.4	2.0	1	23	382	404	382	404	0.98
2	8	1.2e-05	0.0022	19.6	2.8	1	23	410	432	410	432	0.98
3	8	1.3e-06	0.00024	22.6	0.3	2	23	441	462	441	462	0.98
4	8	7.8e-06	0.0014	20.2	0.1	1	23	468	490	468	490	0.98
5	8	1.3e-07	2.5e-05	25.7	3.0	1	23	496	518	496	518	0.98
6	8	2.8e-06	0.00053	21.6	2.1	1	23	524	546	524	546	0.98
7	8	4.8e-05	0.009	17.7	7.5	1	23	552	574	552	574	0.98
8	8	0.0002	0.038	15.7	1.0	1	21	580	600	580	601	0.95

Sequence Information

Coding Sequence: ATGGATAGACGCGAGGGCTATGAGTTTCAGTCAAGGATCGATCAATCTCGCGTTCTTCTGTTGCAGGAGGTGCTGTTGGCGCACAGCAAGTCGAACGGCCACTGCGAGCCCATCACCGTCATCCTTGCAGAGGTCGAGGGCCCGGAGCTCGCCGCTCTCCTCGGCTTCGTCTACACGGGCAGCGCGACGGTGCCGCGCTCGAGGCTCGAGTCGTTCGTCCGCGCGGCCGAGGCCCTGCGGATCCGGCTGCCCGCGGGCCCGGCCCCGCCGACGCCGGCCCTCCCGAGCCACGCGCCCGAGGACGAGGCGAAGCTCGTCGGCTGCGAGCGCTGCCCGTGCACCGGCTGGGCCTTCGCCGCCAGGGACTGGCGCTACCCGTACGAagagccgccgccgccgccgctgccgccgccaccACGACGGCTGGCGGACTGGACCGAGGCCGCGGCGACGCCGCTCGGCTGCTGGGCCCCGATCGCGGAGAGCTCGCTCTCGAGTCCGCCGCCCGGCGAGGACCTCAGCTGCAGGGAGAGCTGCTGCGAGTGGAGGCTGCCCAGGAGGCAGGTTGCGAATCAGGTGACGGCCTCGCCCTGGAGTCAGATCGTCAGGCCGCACCATTCGCCCAAGACGCGGCCGATCGTCCTGCAGAGTCATCCCGAGCCAATTGTAAGTCATCGCGCGCTATCTCCTCATTATGTTTACCATTTCTCCGAAACTGTACGCGCCGTGAGCTCTGAGAAATCTCAGCGTAACGTCCATCCGAAACGGAAGTCACCGAGACCGCTGCGTTATCTGTTTCAGGAGCAGTCGCTGGAGCTGAGGACCCTCGCGGCCCCGGCGCCGCATCCCGAGGCTTACCCGACGACGGCGTCGTTGCCGCTTGCGCCACCCCCGCCCCCGCCGAGCCTCTGCCCCGGCAGCCGTCGATGCTGCCTCTCGGCCTTGAACGGACAAGAATCGACGCCCGGTAAGCCCGAACTCTCCCATCCCGTGAGCCGGCTCTGCGACTCGCTGACCGTCGCGCCGGAACCGCACCCACCCGCGGACGCGGAGCCCGAGAAGCCCGCGGCGGCCCGTCTCGGCATCCTCAGCGACGACAACAACAACGAGGCGGCCGCGCCACCGAGCGCCCGGAGCCTCGAGCATCGCTGCGAGCAGTGCGGCAAGAGCTTCGTCACCCGGGCATCGCTCAAGGTCCATCTACGGACGCACTCGGGCGAGAAGCCGTTCCGGTGCTCCGACTGCGGCAAGCAGTTCTCCCAGTTGCGGAATTACAAGTATCACCGCTCGGTGCACGAAGGAACCCGGGAGTTCGCGGCCACCTGCCCCGAGTGCGGCAAGTACTTCAACGACCGGGGCTACCTCAGCTCCCACATGAAGATCCATCGGAACCGCAAGGAGTACGCGTGCGCCGAGTGCGGCAAGAGCTTCAACCAGCGGGTCGCGTACAACATGCACGTGCGCATCCACACGGGCCTGAAGCCCCATCAGTGCGAGCAGTGCGGCAAGGCCTTCTCCCGGAAGATGCTGCTCAAGCAGCACCTCCGCACCCACTCGGGCGAGCGGCCCTACCAGTGCCAGGTCTGCCACAAGGCCTTCGCCGACCGCTCGAACATGACGCTCCACACGCGGCTCCACTCGGGACTCAAGCCCTACCAGTGCACCCTCTGCTCCAAGGCCTTCACCAAGAAGCACCACCTCAAGACTCACCTCAACTACCACACCGGCACCAAGCCCTACTCCTGCCCAAACTGCGCTCTCAGGTTCTCCCAGAGCAGCAACATGCGCACCCACTACAAAAAGTGCGCCCTAAACAATCCAGCCCAGCAGCGTGATGCGCCGGAACAGCTGCCGGGACGAGAGCGCGCGCAGCAGCCTGCGGCGCTGACGCCGCCCGCCTCGGACCAGGAGTCCAGCGCCGGCAACACGCCGATCATCGCCTGA
Protein Sequence: MDRREGYEFQSRIDQSRVLLLQEVLLAHSKSNGHCEPITVILAEVEGPELAALLGFVYTGSATVPRSRLESFVRAAEALRIRLPAGPAPPTPALPSHAPEDEAKLVGCERCPCTGWAFAARDWRYPYEEPPPPPLPPPPRRLADWTEAAATPLGCWAPIAESSLSSPPPGEDLSCRESCCEWRLPRRQVANQVTASPWSQIVRPHHSPKTRPIVLQSHPEPIVSHRALSPHYVYHFSETVRAVSSEKSQRNVHPKRKSPRPLRYLFQEQSLELRTLAAPAPHPEAYPTTASLPLAPPPPPPSLCPGSRRCCLSALNGQESTPGKPELSHPVSRLCDSLTVAPEPHPPADAEPEKPAAARLGILSDDNNNEAAAPPSARSLEHRCEQCGKSFVTRASLKVHLRTHSGEKPFRCSDCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYACAECGKSFNQRVAYNMHVRIHTGLKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCHKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCPNCALRFSQSSNMRTHYKKCALNNPAQQRDAPEQLPGRERAQQPAALTPPASDQESSAGNTPIIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -