Csis007769.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465094.1:76742097-76748600[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 4.1 9.3 1.2 1 23 138 161 138 161 0.95 2 13 1.4e-05 0.0027 19.3 0.2 1 23 167 189 167 189 0.97 3 13 3.4e-05 0.0063 18.2 2.6 1 23 196 218 196 218 0.99 4 13 0.0023 0.43 12.4 0.6 1 23 224 246 224 246 0.98 5 13 0.00017 0.032 16.0 5.8 1 23 253 276 253 276 0.97 6 13 0.00032 0.059 15.1 2.7 1 23 287 310 287 310 0.96 7 13 0.00012 0.022 16.5 2.3 2 23 317 338 316 338 0.96 8 13 5.9e-07 0.00011 23.7 3.2 3 23 346 366 345 366 0.98 9 13 2.6e-05 0.0049 18.5 2.9 1 23 372 394 372 394 0.97 10 13 8.2e-05 0.015 16.9 0.3 1 23 400 422 400 422 0.98 11 13 0.0012 0.22 13.3 0.4 3 23 468 489 467 489 0.95 12 13 1.4e-05 0.0027 19.3 2.8 1 23 495 518 495 518 0.98 13 13 0.28 52 5.8 1.1 3 23 526 547 525 547 0.95
Sequence Information
- Coding Sequence
- ATGACAACGCTTCTGCCTATGCTATCGGACGCGATCACCTCGTTCGATTTACCGGGAGATCAAATCCTAACGCCAACAACGCTCGCATCATTCGAATTACCGTGCACTTTGATTACGACGTTCGATGCACCATCAACACCCGTTACAACTTTAGTTTCGTTGACCTCGATCGACATGTACGATCCACCCTCGCCTACCGCTGCGATATTCGAGGATCTGTTGTTGTCTTCGGTCACGACATCCGAACCATTTGCTTCGCTCGACGAAACTTTCGAATCGGCCGCGGTTCAAGTTCCGGATACAGCTACTACGACCCCGAACGTCACAGAAACAGAATCGAAAGGAACGTCCGAGAAGGAAACATCGTGGATCGGCCCCAACAAGGATCGTCCCGCAAGGTATCGTTTGCAGCATTTCTGTTCCGAATGTTTAATGGGCTTCACGACGATGGCGAAACTCGGCGATCACATGAAAAAAGAGCATAAAATCGAGCGCCCATTCGATTGCAAAATCTGCGGCGCGAGTTTCGGCAACGCCGAAAACATCACGCGTCACAAACGCATACACGACGGCGAGGAGAAGAAGTACAAGTGCGATCGGTGCAACTATTCCACCTTTCAGAGATCGAACCTAGTTATTCATCAGCGACGTCACCTCAACAACTACATTTACCGATGTCAAAAGTGCAAGGCCGGTTTCATGCAGCGCACCGAGTACACGGAACACTTGGCCGTACACGAGAACAACGAGGGCAATTACGAGTGCAAGCGTTGCAAGAAATTCTTCAAGTACAAGAGAAATCTGGTAGCCCACGTTAAATCTTGTCATCCGGAGGGTAACGACAACGTTGCTCGTACCTTTCAATGCGCCCATTGTCCAAAAATTTACACGAAAGAGGTAAGCCTGAAACACCACGTTAAATTACTGCACATAAATCCGGCGAAGTGCAAGTGCGAGGAATGCGGCGCAACGTTGTCATCGAATCGTGCCTTGGTACACCACATGAAAAGCCATCGGGGTGAAAAAGCCGCCCATTGCGACGTGTGCGGTAAGAGCTTTTCGAAACTATCAAATTTACGGGTACACAAGAGAACTCATACCGGTGAACGTCCTCACGTTTGCGATTTATGCGGTAAGGCATTCGCTCAGAGAACAACTTACGTACATCACATGAAAAATCATAACGGCGACAAGCCGTTTCAATGCAACGAGTGCGGAAAAAATTTCGTCAGCGGCTCGATATTGCGAAAGCACGCGAAAatacacgagaaaaaaataggGCTAAACAATGGAAACGATTATGCATATGAAGATCCTCTGATGGAACTAGGCAATATCGACtacgttaaaattaaacaagacaTTATCGATTCCTTTGACACGGACGACGTAGATCGATGCTGCGAAAAATGCGGCGAGAGTTTCATGTACGTTAAAGCTCTCGTGGCGCATCTACGCTTAGCTCACGGTATCGAGAGACCGTTTAAGTGTCCCCACTGCGAGAAAGCTTACCCGCAACGTTTCCAGCTAAATACCCACGTTAAGAAACAACACGGAGCCTCTCACGTCGTCGCCTGCGCCCATTGCAGCTTCTCGACTCTCGATCGCGCGAAACTCGAACGTCATATCAACAGACTTCACAGCAATGAGTTTCCTAATGCTAAAAATCAACAGGTCGTTGAATTTTATACGAGTACAACTGTTACGAGAAcaattgatataataaaatga
- Protein Sequence
- MTTLLPMLSDAITSFDLPGDQILTPTTLASFELPCTLITTFDAPSTPVTTLVSLTSIDMYDPPSPTAAIFEDLLLSSVTTSEPFASLDETFESAAVQVPDTATTTPNVTETESKGTSEKETSWIGPNKDRPARYRLQHFCSECLMGFTTMAKLGDHMKKEHKIERPFDCKICGASFGNAENITRHKRIHDGEEKKYKCDRCNYSTFQRSNLVIHQRRHLNNYIYRCQKCKAGFMQRTEYTEHLAVHENNEGNYECKRCKKFFKYKRNLVAHVKSCHPEGNDNVARTFQCAHCPKIYTKEVSLKHHVKLLHINPAKCKCEECGATLSSNRALVHHMKSHRGEKAAHCDVCGKSFSKLSNLRVHKRTHTGERPHVCDLCGKAFAQRTTYVHHMKNHNGDKPFQCNECGKNFVSGSILRKHAKIHEKKIGLNNGNDYAYEDPLMELGNIDYVKIKQDIIDSFDTDDVDRCCEKCGESFMYVKALVAHLRLAHGIERPFKCPHCEKAYPQRFQLNTHVKKQHGASHVVACAHCSFSTLDRAKLERHINRLHSNEFPNAKNQQVVEFYTSTTVTRTIDIIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -