Csis030707.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465097.1:68838866-68853089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.5e-06 0.0014 20.2 1.0 1 23 181 203 181 203 0.98 2 31 0.0032 0.61 11.9 1.9 1 23 226 249 226 249 0.96 3 31 0.00016 0.03 16.0 0.5 2 23 256 278 255 278 0.96 4 31 0.00028 0.052 15.3 0.5 1 21 298 318 298 319 0.95 5 31 0.0012 0.22 13.3 0.1 2 23 430 451 429 451 0.96 6 31 0.034 6.3 8.7 0.2 1 23 457 480 457 480 0.90 7 31 0.00014 0.026 16.2 0.1 1 23 549 572 549 572 0.96 8 31 0.0096 1.8 10.4 0.4 1 23 578 601 578 601 0.96 9 31 0.14 27 6.7 1.5 1 23 614 636 614 636 0.97 10 31 0.0039 0.72 11.7 2.8 3 23 680 701 679 701 0.96 11 31 0.035 6.5 8.7 0.9 2 23 764 787 763 787 0.93 12 31 3.7 7e+02 2.3 0.0 2 23 796 818 796 818 0.84 13 31 0.088 17 7.4 0.1 2 23 825 847 824 847 0.93 14 31 1.4e-05 0.0026 19.4 1.0 1 23 855 877 855 877 0.98 15 31 8.9 1.7e+03 1.1 2.7 2 23 927 950 926 950 0.93 16 31 0.00025 0.047 15.4 3.3 1 23 953 976 953 976 0.97 17 31 0.0042 0.79 11.6 0.4 2 23 983 1005 982 1005 0.95 18 31 0.00085 0.16 13.8 4.8 1 21 1042 1062 1042 1063 0.94 19 31 0.0032 0.6 11.9 1.8 2 23 1077 1098 1076 1099 0.93 20 31 2.6 4.9e+02 2.8 2.5 1 23 1102 1124 1102 1125 0.94 21 31 0.0094 1.8 10.5 0.9 2 23 1132 1155 1131 1155 0.93 22 31 1.2 2.2e+02 3.9 0.2 2 23 1163 1185 1163 1185 0.95 23 31 4.4 8.1e+02 2.1 0.0 2 23 1192 1214 1191 1214 0.87 24 31 0.27 51 5.9 2.7 2 23 1223 1245 1223 1245 0.96 25 31 0.32 59 5.7 0.8 2 23 1251 1273 1251 1273 0.93 26 31 0.021 4 9.3 0.1 1 23 1340 1363 1340 1363 0.96 27 31 0.014 2.6 9.9 2.5 1 20 1392 1411 1392 1413 0.94 28 31 0.38 72 5.4 1.9 2 23 1505 1527 1504 1527 0.94 29 31 0.52 96 5.0 0.4 2 23 1534 1556 1533 1556 0.95 30 31 0.2 38 6.3 1.8 1 23 1567 1589 1567 1589 0.97 31 31 0.0006 0.11 14.2 0.8 1 22 1596 1617 1596 1617 0.94
Sequence Information
- Coding Sequence
- ATGTCTTTCTGCGACGAGGAAGAGGTAGAGATAGCGGAAGATGACAGGCTACCGAAATGCCTTTGCTACAGATGCATGTACAATTTGGAGAACTTCTACGACTTTAGAACGGCTTGCGTCAATGCTGTATCTCTATTGGAAAGATGTTTACCACCGGAAGAGACGAAGTTGGAGATCAAACAAGAGGGCGTGGACGTGGAGCAGTACTCGGAGCTGCGGATGGAGCTGCTCAAGGAGAAGGAAAACGTACCGATGCTCATTCCCGAGGCGCCGGTTGTCAATCCCAACGCGGCCCTCGGCACACCCCCGAGGCTCAAGTCCGACGGTGAGAACGAGGATATCGAGCGCAGGAGTAATGACGAACGTCTAGAAGATAACGACGATCACAAGTCGGACGAGTACGAGATGGATATGGAGACAAACCCGAGCGACTTTCTCGAAATGAGCGCGATGGTTCCCGAGGAAGAGACTCACGGTTTGCCTCAACCGCAGCGTCAAGACACCGGTGTATTCCAGCATCGTAACGAGCAGCACGAGGTATACGTTTGCTCGTTGTGCAACAAAGCTTTCAGCTCGAAAGGTCATCTGTCGCTTCACGCGAGGATACACGTAGGCGCGGGAGACGTGATCGGCGAAAAAGTCATCACCGACGATCACACCTCCTACAAGAGGCCCTATCAATGCGATCTTTGCAACAAGTCTTATTCCACGGCTAAGCATCGGTGGGGACACGTATCCACGACGCATCGgGGCCATCCAGCGGTGACGTGCGGCTACTGTTCGCGCATCTACTCGACGCGCACGAATCTCGAGGAGCACATTAAGTCGCGTCATGCGGGTTTACCGCCGCCGCCCGAGATTCAAGGACCGTATGTACAGCCGGACTCGCGTTACCAATGTAAAACTTGCCCCAAGATGTACACAAATATTACGGATCTCAATAAGCACAGCAGGGTATGCGTGGGCGAACAGCAACGCAAAGAGTTCGCCAATAACAGCTACGGTGCTCAAGCCTTCGGTAAAAGAAACCGTAACCaaaaacttaaaaatgccTTGGACCATACTTCAGATTTATCCAGTGTTGACTCAGATTATGAGAATAAAGATTATAAGAGTGCTGAAGCGAAACTTGCCAAAAATCCTCAGTTAACTATTCTTAAGCAGGCTCTGATTAAGGGCGACAgtgtaaaaaaagaatacgaagaaagacaaaaaatgttAAGTAAGGCAAAAAAACAATCTACTGCAAATAACAAAGAACTGGTTGAACCCGAAGCAAAGAGATGGTACTGCGAAGTCTGTCCTTTAAACTTCACAACCGTTGATGAGTTGCGCCAACATGAGAAGTCACACGATGCCGACAAGCCTTATATATGCATTTTATGCGAGAAGGACTTTGTGTTGAAGTCGTCATTGAGTAGGCACATACTCCTATCTCACGGAGTAGATCCGACGCCATTAATAGAGAGCGATAAATGCTTGAAAAAATCAGTTCAAGAAGTAAATATGCAAGTGCCGGTAATAAAGCAAGAGCAGAATGTTACCAAAGAGAATTCTACATCGCCATTTTCTGCTGACaatatgGATAACGAAGATGATGAACATGAAAACGGAAATGAAAACATGCTCGAAATGGAGACAGTTTTTGTATGTGAAATTTGTACGCGAGATTTCAATGATCGAGCGTCGCTATGGTTACACATCCGAGCAACTCACAAAGAATACGCGGCATTTGCCTGCGGAGTTTGTCTGAAAATTTGCTCAGATAATGCACAATTATTAAATCATGTCAATATGTATCATGGAGGTTCAAAACTTTTAATGTCAGAACAGAGGAGGTATAGTTGTACAATATGTGGAAGACAGCATGATTCAAGGAAAAAGCTTATAACTCATGTATCTATTCATAATGTTGATCCGGGTTACGATCCCGCAAGTTTTGTACAATTGAATACTAattattacaatgaaaatattaatagtaatgAAGGAAATGAGTTAATCATGGACTGTGatgatgaaaatgaaaaggTGGATTGTTATATTTGTTGCAAATCATTCCCTAATGAAGATCACCTTATACGCCATCAGAGAAATGCTCATAAATCTGAGCAAATAGTTCAAGTTGGCGAATACGGTGGAAGTGGTGGATCCCCTGGGCAAAATGGTACTGGCACTCGAGCTCAATATCATCTGTTTTTCGTGTGTGAACTTTGCGGCAGCTCGCATCCTAGTAAATGGGAACGTTGGCTACATGTCAGCAGTTTGCACAGCAACGAGCCTTCTATTAAATGCGAACGTGACGATTGTGGTAAAATTTTTGCGACAAAAACGTTGCGTAATGAGCATGCACAACATCATCAACTCCAAGGCATTTCGCCTAATACTTGCGAAATTTGCGGTAAATTATGGGGCAGTCGCGTTGATTATTGGAAACACGTTATGGGTGTGCACGCAGATACAGTCCCGCTAATCTGCGGTGTTTGCCTTAAGGTCTTCCCGGATGTTATGCAGCTCAGTCAACACGTTAAGTTAAAGCATTGGCCGCTTACTAATGGCGATTTTAGTTGTGACATTTGCGGACGGCCATATTCAAATAAGAGCAAAATGTTGAGGCATAGAAAGATTCACGGTCTCGATGGAGAAGCTTATAATCCTGCAGCTACTAATAGCAGTTTGATTATTAACGATGCTATGAGTGAAATGTCTGgtCCACCAATGCCATTGCAATTAGATAATGGGCTACCACAACCAGTGGAGCCTTCATCGCTTGATCTAAGTTGCGAGATGTGTGGCGATCTTAAATTCACATGTTTAGAAGATCTTTGCAATCATAGACGTATGGCTCACAATCTTTTCCCTTGCGATCTCTGTAACAAATGTTATGGGCGTACTTCCCACCTTTGGAAACACGTTAATCGTGTACACAAAGGTCATGAAGATGTTACTTGTCGTTATTGTCTTAAAACAAGTGCATCGAAAGACCACCTTGCGGCTCATATTGCCAAGATTCATAGATATGAACCAGATGTCAAAAACGACTTTAGAGACGCGATAAGTTATAAGACTAATTATAATACTGCAACTACAGCAGTAGCAGCCGATGCTGAAGAGGATGTTTTGCACTTTTGTGAGAAGTGCAATAAGTCGTTCCATAAAAGGTACCTGTTACGTCGTCATATGAAAGGCTGTCAAAATTATCGTAAAGATCCCGGCGCATTACTTACACGATGTAGAGCTTGTGAGCGTATATTCAAGGATCGTGCGAGTTTACAAAAACATATCGAGAACCATCATAGTTCGTATGAATGTCATCTTTGTAAGGTGACCATTACCTCAAAACTTGGTATAATGACGCACAACCGCGTGCACCACATGCTTCATCCAGACCTTACTTGCGAACTTGAAAACTGCCGGAAGCTCTTTAGGACAAAAGAAGATTTAGAATCACATCGTAAAGATCATAAGCATCATGGAAGTCCGAACGTTTGCGACTTCTGTGGAGATACTgtggaaaataaattgaaacttaAAATGCATATACTTAGTTTACATAGGAATGAAATTGGCGTTTCCTGTGGAGTTTGCTTGATACCAATGAAGGATCCCAAGGATCTTAAAAAGCACGTAGAGGATGTGCACGAGAGTATATTATTAAAACCAAATACTTGTCAGgtTTGTGGCAAGCAATACGCATCGAAGTGGAAAGCATTCGATCACACAAAGAAGTGCCACGGCAAAGTTTTCCGTACTTGCAAACAGTGTTTGGCGGTATTTACTTCGGACGAAGATTTACGTTATCACTACGAGCACATACACAACATTCCTAAGGATCAACTGGACGCGTTCCAGTATCGACTCGAGGTCGCGGGTAACAAAATGGATGACTACGATCTTGGGCCGCTCGAGGTCGTCGTTAAAGAAGAGCCCGAGGAGCTGGACTTCGACATGGAGCCCTTCGACGACGAGAATTGCAACTCGAACGATTCCAAAAGGCGACGATCCGTCACCGATACCTACGACTGCGAAATCTGTCCCGAAATCTTCCTCAATAATGAACTCCTCTCCTCGCATTACAGAAACGTTCACAACACGGAACCTGTGCGCATgtataagaaaatgaaattcgACAACTCCACCAAGACTAAAAAGAAGATGCGCGATCGAGAAAATTACGAGTGTAAAAATTGTCAGAAGCAGTTTTGCACGAAAACATTGTATCTGAGTCATGTAAGCGCATGTACGCGTAAATCCTCCGGGCAAGCTCCTACTTCTATCCTAGAGGCGCATCTCAAGAACAACAACATGATCAAGCGAGAAGAACCCGAACCTATACTCTGTGAAACAAACCTAAACATTCCGGATTTCAACCTCTTCGAAGACATAAACATGCAGCTGTCGGGTCATAAACCGGTACCTAGCCTTATGCCATTGGGCCATTCGTCCAAGTCGTCCAAATATTCGAGAAAAGATTCGCGCAAGGTATACGACGAGTCGACCAACACGGAATGTACCTGCGAGGTATGCGGTAAACAATGGCCGGCAAAGAAACATCTTTGGCAGCATTTGATACGTTTTCATCGTGCGGAGGCTGCGGTCACTTGTGGCGTGTGTTTAAAACTATGCGCGACGTACGACGATTTATCGGAGCACTTGAAGAACGTTCATCCGGCGATACTGTCGACAGCGGGTAATAACTTCACGTGTAAAATCTGCGGTCGTTATCACAATGCGCGCAGCAAATTACTTCTACATATGAGTATTCATATAAATTGCAAGAACAACTTTATGTGTCAACGTTGCAACAGAAGCTTTGAGAACGAAGACAAGCTGAAGGATCACATGACGACGTGTCTCGGCGTTAAAGAAGAACAAGGGGGCGATCCTGAAGTTAACGTCGTTAAAGAGGAGATCGAAGAAAAGGGTAGCCTTATCGGCGACGATGAAGAACCAGAAGAAAACGAATACGAGTCCGAGGAAGAAAATTCAGAGAACGCGGACAGTAGTTCTGATAAATCTAACGACTCTGACAGTAATAGTAGCAACAGCAACAGTAACAGCTcaagcgacgacgacgacgacagtgACGATGATGAGGATGATAATAGATCGAGAAATATCGAGGAAGACAGCAACAGTAAAGATTCCGAAAACATTGAGGAAATTCAGGAATCTGATGCCGGAAAGCGTGAAATTATCGAGGAAAATGAAACAATGAGCCTTGGCGAAGAggacgaagaagaagacgaggaAGAGGATAAATCGAGATACGGGCATATGTCCGAATCGGAAGACGACGAGTACcttaaaaagaaacaagagcaacagcagcaacaacagcaggaGATTCAGGAAAGATACGAGATGTCGCAGAAAGAACCTATGCTCGTTAACTATTCCGATGACGAGGGACCGCCAGCTCTTAGTCCCATGTTGCCGATGGCTATAAAAGAATCGAACGGCGCTCATAACGATGACAGTCAAGAAGCATTGAGGCATCGAACACTGAATGACGCGatgaagaaagaggaaaagaatgACGAGAGCGATGAAGAAAGCAGCGAAGAAGAGGCTGAGGCATCCGATGACGAAGGCGTTGTACACGAAGCTGAAGTCGTTGATCCAAATGCTGACTTTCATGCAGATAATAATTCTAGGAGTAGTAATGAAgGCAATGATGAGCATGTACAAGCTAAAGTGCAAGAATCAGAGGAAGAACAGATAGAAGCAGAAGGCGAATgcgaagaagaagatgaagaagaagaagaaggtcaAGAAGAAGAGGAAATGGAGGATCAAGAAGATCATGAggaagaacaagaagaagaacaagaagagCAGGAGGAGCAGGAAGATGAAGAACAAGAAGATCAGGAAGAGCAAGAAGAGCAAGAAGAGCAGGAAGAGCAAGAAGAGCATGAGCAGGAACAGGAAGAACAAGAAGAACTAGAAGAACAAGAGGATCAAGAAGATCAGGAACATGAGGAGCATGAGATGCACGAAGAACATGAAGAACACGAAGAGCACGAAGAACATGAAATGCATGAAATGCAAGAGGAGCAAGATGAACAGGAGGAGCACGAAGGACAAGAAATtgaggaagaagaagatgatGAAAATATGGATCATGAAATGAACGAAGAAGTGCTTGAAGTAGATGAAAGCGAAATGCACAATCTCAATGGTACCGTCCTGATGCTTGCAAATGATGCAGACGGCAATCAAATTCTTATTGAGCGAAACATGGCCGATCTTGAAAATGACGATTCAGTTCACGATATGGCTCAATATGTCTTTCAAGATGGCACAGGTTTTGCTCTCGAAGATTACGAAGCTATCGTCGAAAGCCAAGGTGACGAAGATGATGAGGAGCATAGTTTTGCAATGGAAATTACCAACTCCCAAGAGGAGGAAGTTGAAGAGCAAGAGGACGACGAAGAAAATGAAGGTCACGAAGCTCACGAAGCTCACGAAGCTCACGAAGACCATGAAGGCCACGAAGAAATGGAGGAAGTTGAAGAAGAAGAGGTGAACGAAGACGAACAGAGTTCCAGTGCCAAAAGCTAA
- Protein Sequence
- MSFCDEEEVEIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVSLLERCLPPEETKLEIKQEGVDVEQYSELRMELLKEKENVPMLIPEAPVVNPNAALGTPPRLKSDGENEDIERRSNDERLEDNDDHKSDEYEMDMETNPSDFLEMSAMVPEEETHGLPQPQRQDTGVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEIQGPYVQPDSRYQCKTCPKMYTNITDLNKHSRVCVGEQQRKEFANNSYGAQAFGKRNRNQKLKNALDHTSDLSSVDSDYENKDYKSAEAKLAKNPQLTILKQALIKGDSVKKEYEERQKMLSKAKKQSTANNKELVEPEAKRWYCEVCPLNFTTVDELRQHEKSHDADKPYICILCEKDFVLKSSLSRHILLSHGVDPTPLIESDKCLKKSVQEVNMQVPVIKQEQNVTKENSTSPFSADNMDNEDDEHENGNENMLEMETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNTNYYNENINSNEGNELIMDCDDENEKVDCYICCKSFPNEDHLIRHQRNAHKSEQIVQVGEYGGSGGSPGQNGTGTRAQYHLFFVCELCGSSHPSKWERWLHVSSLHSNEPSIKCERDDCGKIFATKTLRNEHAQHHQLQGISPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMLRHRKIHGLDGEAYNPAATNSSLIINDAMSEMSGPPMPLQLDNGLPQPVEPSSLDLSCEMCGDLKFTCLEDLCNHRRMAHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASKDHLAAHIAKIHRYEPDVKNDFRDAISYKTNYNTATTAVAADAEEDVLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKVTITSKLGIMTHNRVHHMLHPDLTCELENCRKLFRTKEDLESHRKDHKHHGSPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVAGNKMDDYDLGPLEVVVKEEPEELDFDMEPFDDENCNSNDSKRRRSVTDTYDCEICPEIFLNNELLSSHYRNVHNTEPVRMYKKMKFDNSTKTKKKMRDRENYECKNCQKQFCTKTLYLSHVSACTRKSSGQAPTSILEAHLKNNNMIKREEPEPILCETNLNIPDFNLFEDINMQLSGHKPVPSLMPLGHSSKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYDDLSEHLKNVHPAILSTAGNNFTCKICGRYHNARSKLLLHMSIHINCKNNFMCQRCNRSFENEDKLKDHMTTCLGVKEEQGGDPEVNVVKEEIEEKGSLIGDDEEPEENEYESEEENSENADSSSDKSNDSDSNSSNSNSNSSSDDDDDSDDDEDDNRSRNIEEDSNSKDSENIEEIQESDAGKREIIEENETMSLGEEDEEEDEEEDKSRYGHMSESEDDEYLKKKQEQQQQQQQEIQERYEMSQKEPMLVNYSDDEGPPALSPMLPMAIKESNGAHNDDSQEALRHRTLNDAMKKEEKNDESDEESSEEEAEASDDEGVVHEAEVVDPNADFHADNNSRSSNEGNDEHVQAKVQESEEEQIEAEGECEEEDEEEEEGQEEEEMEDQEDHEEEQEEEQEEQEEQEDEEQEDQEEQEEQEEQEEQEEHEQEQEEQEELEEQEDQEDQEHEEHEMHEEHEEHEEHEEHEMHEMQEEQDEQEEHEGQEIEEEEDDENMDHEMNEEVLEVDESEMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVESQGDEDDEEHSFAMEITNSQEEEVEEQEDDEENEGHEAHEAHEAHEDHEGHEEMEEVEEEEVNEDEQSSSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -