Csis017759.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465096.1:14932272-14935613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 2.7 9.9 0.6 1 23 268 290 268 290 0.95 2 12 7.2e-05 0.013 17.1 1.2 1 23 298 320 298 320 0.98 3 12 9.3e-06 0.0017 19.9 0.3 2 23 328 349 327 349 0.96 4 12 5.6e-05 0.011 17.5 1.2 1 23 355 377 355 377 0.98 5 12 1e-05 0.0019 19.8 2.4 1 23 384 406 384 406 0.98 6 12 7.5e-06 0.0014 20.2 0.6 1 23 412 434 412 434 0.96 7 12 1.1e-05 0.0021 19.6 0.1 1 23 440 462 440 462 0.98 8 12 6.4e-07 0.00012 23.6 1.2 1 23 468 491 468 491 0.96 9 12 3.3e-06 0.00062 21.3 0.5 1 23 497 520 497 520 0.96 10 12 5.1e-06 0.00096 20.7 2.8 1 23 526 548 526 548 0.99 11 12 8.2e-05 0.015 16.9 0.4 1 23 554 576 554 576 0.94 12 12 0.00034 0.063 15.0 0.2 1 23 582 606 582 606 0.94
Sequence Information
- Coding Sequence
- ATGACGGATACAGATAAAGATCCTACGTTTTGTTTACTTTGTGATTGTAAATTGGGGGTATCATCAAGGAATAGTATAGATATTTTTGGAGATAATGCTACAACAAATTCAGAAAAACCTATAATTGAAGTATTaagttttactttaaataaagatttaaatgaagaaaatatacattcatcaattatttgtaaaaaatgttataaacttCTTAATGAGgcTGATGAATTACAAATCAAATTAGAAGAAATTAAACAAGAAATTtgtaatctatttaaaaaaactgcTGCAAAATTTTTAGAGTTGAAGGAAGACGAATATAATGATCATGATTATATTGATAATGTAGACAATTTAGAATTAGAAGAAAGTGAATCTTCTGATAATACGAAAGAAGTCAAAAAGAAATCTAAAAAAGTTATCAGTTCAGAAACAATGATTCAAATTGAaTCTGAAGAAGTCAAAGATGAAGATGATAGTACTACTAATGAGAGTATTATAGAGCAAATTGAGGATATTAATGATGAACAAAATTTCGATCATTTAAAGACCGATGATGCACAATCAAATGACAATGCTGAAGAAAATTCTCTTGAAAATGAATCACAAATTGAAGAAGTTTTAATTGAGAGaaaaaatgcaacaaaaaaacaaaaatcgaaaAAGGAGGACTTTTCAGAAGAGCTGGTGATAAGAAATGGTGATAATTACGTTTGCAAACTTTGTACGGGAGATAACAAGGAAAATAATGATGCCAAAAGTATAATTGCTCATATGAGAGATGAGCATGATGTGCGATTATATATTTGTGACGTTTGCGGAGATCAGTTTAGAAAACGAATTGATCTATCACACCATTTAGATGATCATGTAGCAAAAGAAAAAGGTGATTTTCAATGCGAAGTATGCAGTAGAATATTTAGTAACTTACGACTTTTTCGTATACATAAACGCATTCATTATCCTCAAGTTAAATCTTGGTCATGTACAATTTGTGGCAAACGTTATAGCTCAAAGAATCTACTTGAAGAACATACAAATGTACATACAGGGAATCGACCATATATATGTGAAATTTGCGGTAAAGATTTTGCATCAAAGTATACTCATCGAGCTCACATTAAAACACATGAAGTTAGACCAAGACCTTTTGAATGCACTCAATGCAATAAAACTTTTCTCAGTCAACAAAATCTAACACAACATATAAAGACGCATAATGGTGTTAAAGAATATGTTTGTCACCAATgtgGAAAAGCTTTTGGCTCTGCTCATAATCTTGAAGTTCATAACATTGTTCATACTGGATATAAACCTTATATATGTCGCGTTTGTGGCAAAGCATTTGCACGAAAGGCTGAAATTCGAGACCATGAAAGAACTCACACGGGTGAAAAACCTTATCAATGCGAATTTTGTGGTGCTACTTTTAGTCAAAGATCAAATTTACAATCGCATAAACGAGCAAcgcattttaatgataaaagatataaatgtGACGATTGTGGAAAAGGCTTTAAAAGAAGAAGATTATTAGATTATCACATTAAAGCTGCACATACTGGCGAACGTCCTTATAAATGTGAAACTTGTACAGCAACTTTTGTTTACCcagaacattttaaaaagcaCATGCGTATTCATACAGGAGAGAAACCTTATTTGTGtgaaGTTTGCGGAAAAGCTTTTAATAGCAGAGACAATCGTAATGCACATAGATTTATTCACAGTGATAAAAAGCCTTATGAATGCTTAGTTTGTGGAATGGGATTCATGCGAAAGCCTTTACTTTACACACATATGCAAACTCAAGGTCATTTGAATGATACTATTGTTGTTAATCAACCAAGACTAACAACAGAGGAAGATATGATTATTCAAGATAATAGAGTTCATTTAGTTGTAGAGGATGACGGAAatgaattgGGAGAAAATACACAATTAATTGTTACGGATTTGAAAAACCATGTAATTATTCAAGAAGGGAATGAACAAAATGTTTTAACTCTTGCAGAAGGTGACATAGATAGTGAAGATATCGATCCACTTTCAGATAGGCAGATAACTTTCGAAGAGTCTGAAGAAATGGAATGTAAacaagaagatgaagaagaatcTATGGAAGAGGTTTATGGTTACCAAGATGAAGAAGGTAATACCATAGTCTTGCCACCAGGTACcgatattaaagaaattattgaagATGACAATAAAACAATGCGGTTAGTGCAGATTCGCATACCAACGGAAGCCAGTGTAGACGGTAGAAATTGGTTGAGTTTAGTACAAAATGCTTAA
- Protein Sequence
- MTDTDKDPTFCLLCDCKLGVSSRNSIDIFGDNATTNSEKPIIEVLSFTLNKDLNEENIHSSIICKKCYKLLNEADELQIKLEEIKQEICNLFKKTAAKFLELKEDEYNDHDYIDNVDNLELEESESSDNTKEVKKKSKKVISSETMIQIESEEVKDEDDSTTNESIIEQIEDINDEQNFDHLKTDDAQSNDNAEENSLENESQIEEVLIERKNATKKQKSKKEDFSEELVIRNGDNYVCKLCTGDNKENNDAKSIIAHMRDEHDVRLYICDVCGDQFRKRIDLSHHLDDHVAKEKGDFQCEVCSRIFSNLRLFRIHKRIHYPQVKSWSCTICGKRYSSKNLLEEHTNVHTGNRPYICEICGKDFASKYTHRAHIKTHEVRPRPFECTQCNKTFLSQQNLTQHIKTHNGVKEYVCHQCGKAFGSAHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHFNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEEDMIIQDNRVHLVVEDDGNELGENTQLIVTDLKNHVIIQEGNEQNVLTLAEGDIDSEDIDPLSDRQITFEESEEMECKQEDEEESMEEVYGYQDEEGNTIVLPPGTDIKEIIEDDNKTMRLVQIRIPTEASVDGRNWLSLVQNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -