Csis031714.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465098.1:12367009-12371744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 24 6.9 2.3 1 23 368 390 368 390 0.95 2 18 0.063 12 7.9 1.8 2 23 435 456 434 456 0.95 3 18 0.08 15 7.5 0.5 2 23 517 538 517 538 0.97 4 18 1.5e-05 0.0027 19.3 2.3 2 23 591 612 590 612 0.97 5 18 5.9e-06 0.0011 20.5 5.7 1 23 617 639 617 639 0.96 6 18 0.00062 0.12 14.2 0.8 1 21 646 666 646 670 0.92 7 18 0.015 2.8 9.8 1.6 3 23 754 774 752 774 0.95 8 18 4.2e-05 0.0079 17.9 3.8 1 23 818 840 818 840 0.97 9 18 0.00029 0.055 15.2 0.7 1 20 845 864 845 866 0.94 10 18 0.046 8.5 8.3 0.3 2 23 877 898 877 898 0.97 11 18 1.4e-05 0.0025 19.4 0.7 2 23 936 957 935 957 0.97 12 18 2.7e-05 0.0051 18.5 1.6 1 23 962 984 962 984 0.95 13 18 0.00012 0.023 16.4 1.9 1 23 990 1012 990 1012 0.98 14 18 4.8e-06 0.0009 20.8 0.4 1 23 1028 1050 1028 1050 0.95 15 18 3.9e-07 7.3e-05 24.2 0.6 1 23 1056 1078 1056 1078 0.99 16 18 4.3e-05 0.008 17.8 0.2 1 23 1084 1106 1084 1106 0.97 17 18 0.00016 0.029 16.1 4.1 1 23 1112 1134 1112 1134 0.96 18 18 0.011 2.1 10.2 0.4 1 20 1140 1159 1140 1161 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAGGTAAATACGTCGGATGAACCGCGGCTACCACCGCCAAATGACGACGACGTCGTCGGGATGGTACAGGAGCACCAGATGGATATCTGTCGAATATGCCTCCTTGGCAATTCTTTGATGCTCGGTCTCTTTCACGGCAATAGCATTGTTTCTTTATCTGAAAAAGTTATGAGTCTCACCAGTGTTAAgATGATGCCTGGCGATGGACTGCCTTCTCATATTTGCTGTGATTGTAATGATAAACTTGAATTggcatataaatttaaattacaagttGAACAAGCCGATAGTGTTTTACGAGAAAAATTAGATTCATTGAATATTaaagaagaattattttttagtgATGTGGATGTCAATTTAACAAGTCACAGAAATGATGTAGGTGAAATAACAGAGGAAAGTTTACTTTTGAAAGATCACATAGATTTGTTGAATGTTCAAAAGATAACCGATGAAGAAAGTCATctacaaaatgaaaatatacaaaaacaGGTTGATAGTATTAATATTGATCAGCATGATATAGATAAACATGAGAATGAAGAGAATCATAAACGAAATgaagaaatttcaaatattgaaattcaaGAGGATCAAGATATGCAAACAATTAACAATGATCGACACATTCATCTTCATGAAAAAGATATGCAACAAATTGTTAATGAAGAACACAATCACTCATTTGGTGAACAAGATCTTCAAGAAATGATGCTTGATGAAATAAGTGAACACGAAAGGATACAACAATTGAATCAAACTCAGCATTTGACAATGCATGAACATAATTATGTAGTGGAATCACAGTCTTGTGAAATTTCTATTGAAAATCATACATTAAACTCAGTGgaAATTGAACAAGATACGAaggaaaatctacaaaaagagTCAGCTAATgaacaaattgaaatttatgatGTAGCAGAAGAATCCTCACTAAATGAATCGAATCGTAGAAGTAAGCGCAAGATAAATCAACAGAAATCTGATTTTGATCGAGATTCAgacgaagaaaattattttgaaaatttgaatcttAGTTCTAGATTAAAGCAAGTTCAAtctgaaaaatctgaaaaagtttattttttatgttacttatgtgataaacaatttttatcaaaagaagTGTTAAAAGAGCATATGCACTCTCATGAAGAAGTCAGAAAAACTTTATCTTTAGTGAGAAAATCGCCGGAGAAATTGCAGAAAACACCTGAAAAAGTTTCAAGCGCAACTGTGAGCCCAATATCATCAAAGCCACCATCGAGTGGAAAACAACCAAACAAGTGTCCTCACTGTGGAAAAGAATATCTttacattatttcatttaataaacacTTAAAAcaacatgaaaaagaaaagaattacaTAAAAGATGAATCTATGCCATTAGAAGTTTCTTTTCAGGAAAATGATGATAGTTTGGATTATCATAATTATGATAATTCTACAATAGACACTGAAGAAGATTATAAACAAAATGAGAATGAAGTTACATCAAACACAATATCGAAGAAATCTAATTTGCCTAAATGTAATGTTTGTGAGGAAGAATTTGAAGCAATGGATAAATTAAGAGATCATCGATCAAAACATGTAGTTGAAGGTGTGCTTACAGAACAAGACTTAAATAATGATACCGAACAAATTGAATTCACAGGTATTTGTACTAAAAAtgataaagataatataaatataaataatcaagaAGAAAGTATAGAATCTATCACAAaggaagaattaaaagatttaaaatgtcCACACTGCCCAATGAGTTATGCCCACAAAAAGTCATTAGCTCGGCACATGGAAAGTCACTGCGGTACCAAGTATACTTGTAAGATTTGTCATCAATCGTTCACGCGCAAGGATCACTTGCGACGCCATGCTGAGCAACATGGTGGTCGATTCAAAAACTTTAAATGTACACAATGCAATAAGACATTTGGTAATGAATTAACGCTTCGTAATCACTTAATAGCGACAAATCATAAAACAGTGATACATGGTCAAGAATATGATccgaataaaagaattaaacgaGTGGCAGCAAAAGCAGCTCAAAGGATCATTGATCAATTAAAAACAGATTTTAATCTAGATGAGTTTGATGAAGAGGAGAaagataaaactaaaaattcttttgatGTAAAAGATGAACAAAATATTCCTGATCAAGAACAGACAGATTATGTGCCAACAGtaccaaaaaaatttcaacgtaaCACTAAGACCTTATTCTGTGCTACTTGCAATCAAAATTGCCCTTCAAAGCAAGCTTTGACCAAGCATATGGCACAACATGTGAAAGATGAAACTACAAGTAAGCaagagaaagttaaaaaatctgAAGAAAATcaggaaaatgaaaatgaagataATGAAGAAGATGATGATGACTTTGAAGGTGGACTTGATTGGCCAATGGATAGCCATGAGTGTCCAACTTGTAAAAAACGATACAGTACCAAAAAATCCTTGTTGCGCCATCAATTATTGCATGAAGAACCAAACTTTGAATGTGATATatgtaatgttaaattttaccgGAAAGATAAACTCAAAGCACATTATGACAAATGTTCAGAGAAAAATCCTGATCAAGTGCGAAAATGTAACATATGTGGtgattcttttgaaaataatgaaattttaaaggaGCATAGAGCAAAACATGTAACTGAGGGAATTTTGACGGAAGAAGATCTTCGAGAAATAGAGCCGAAACCAGAGGATAAAAGTAGTGAAAAAGTTCCTCGTAAGAGGCGGACGGATATAGTGGGTCTCGAATGTACGGAATGTAATAAACGCTATACTTCTAGAAAAGGCTTGTTAAGGCATATTCAGGTGCACGAAGGAAAGAAGTATTTGTGTGATATTTGTCCTAAAAAATTCTATAGGCGGgaacatttaaaaatacacgTAGCTAAGCACAATATGATCAAACCTTATAAGTGTCCGCGATGTACTAAACGGTTTATAAAAGAAGAACAACTTAGTAATCACCTTACGAAACATGACAAATCATGTAAAAAAGCTAAGGATTCTGATACATCTAAGAgatttttatgtgaaatttgCTCCAAAAGTTTTACGCAATCTACAACTCTTATAGCACATTTGAGGGCTCACAACGGAATTAAACCTTACGTCTGTGAAGTTTGTTCAAGACCTTTTACTACGAACGCTTATTTGAAGATGCACATGAGAACGCACACTCAGGAACGTCCATATATATGTCAATATTGTTCTAGAGCTTTTGCAAGGGCGGATACCTTGGCTAATCATCTAACTTCGCATACTGGAGAGGCTAAATATCATTGCAAGTATTGCCCAAAGAATTTCAGAAGGCTCAAATCCCTCAAAGAGCATGTTTTTATTCATACAGGACAACGTCCTTATGCTTGTCCTACTTGCGATAGAAGATTTAATAACAATGGAAGCAGATACGCTCATAGCAAAAgatgcaaacaaaatttattacaaggGAGACAATCGCAAATCACAgttcaaaatgtaaatatagAACAGCAAATTTCAGAACAACATGATCTGGCTCAGGAAGAACAAGAACAATTGCAATTGCAAGAACAACAGGAAATACAGAATCAGTTGCAGCCACAGAGGATACATCAAGCTACTATCAGTCAAGCACAGATTATAAAAccacaaaatataaaaacaataacaattacAAGGCCGGATGGAGGATTAAGTCAACAGCATGTCATGACGCATCAGGAGATTTTAATGCCTCTTATATTGCCATTGACCGTTACATTGACAGACGTAGGTGAAGAAGTGATTTTGCCAGAGGGAACGAAAATTTTTTcggcataa
- Protein Sequence
- MDAVEVNTSDEPRLPPPNDDDVVGMVQEHQMDICRICLLGNSLMLGLFHGNSIVSLSEKVMSLTSVKMMPGDGLPSHICCDCNDKLELAYKFKLQVEQADSVLREKLDSLNIKEELFFSDVDVNLTSHRNDVGEITEESLLLKDHIDLLNVQKITDEESHLQNENIQKQVDSINIDQHDIDKHENEENHKRNEEISNIEIQEDQDMQTINNDRHIHLHEKDMQQIVNEEHNHSFGEQDLQEMMLDEISEHERIQQLNQTQHLTMHEHNYVVESQSCEISIENHTLNSVEIEQDTKENLQKESANEQIEIYDVAEESSLNESNRRSKRKINQQKSDFDRDSDEENYFENLNLSSRLKQVQSEKSEKVYFLCYLCDKQFLSKEVLKEHMHSHEEVRKTLSLVRKSPEKLQKTPEKVSSATVSPISSKPPSSGKQPNKCPHCGKEYLYIISFNKHLKQHEKEKNYIKDESMPLEVSFQENDDSLDYHNYDNSTIDTEEDYKQNENEVTSNTISKKSNLPKCNVCEEEFEAMDKLRDHRSKHVVEGVLTEQDLNNDTEQIEFTGICTKNDKDNININNQEESIESITKEELKDLKCPHCPMSYAHKKSLARHMESHCGTKYTCKICHQSFTRKDHLRRHAEQHGGRFKNFKCTQCNKTFGNELTLRNHLIATNHKTVIHGQEYDPNKRIKRVAAKAAQRIIDQLKTDFNLDEFDEEEKDKTKNSFDVKDEQNIPDQEQTDYVPTVPKKFQRNTKTLFCATCNQNCPSKQALTKHMAQHVKDETTSKQEKVKKSEENQENENEDNEEDDDDFEGGLDWPMDSHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILKEHRAKHVTEGILTEEDLREIEPKPEDKSSEKVPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLSNHLTKHDKSCKKAKDSDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQGRQSQITVQNVNIEQQISEQHDLAQEEQEQLQLQEQQEIQNQLQPQRIHQATISQAQIIKPQNIKTITITRPDGGLSQQHVMTHQEILMPLILPLTVTLTDVGEEVILPEGTKIFSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -