Csis007770.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465094.1:76751032-76754717[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.3e-05 0.012 17.3 0.4 1 23 77 99 77 99 0.97 2 18 0.00071 0.13 14.0 3.7 1 23 101 124 101 124 0.94 3 18 0.0064 1.2 11.0 1.4 1 23 130 153 130 153 0.91 4 18 0.0014 0.27 13.0 2.8 1 23 159 182 159 182 0.97 5 18 5e-05 0.0093 17.6 0.3 2 23 189 211 189 211 0.95 6 18 0.0067 1.3 10.9 0.2 1 23 216 238 216 238 0.97 7 18 0.00048 0.09 14.5 1.1 2 23 245 264 244 264 0.95 8 18 7.5e-06 0.0014 20.2 4.0 1 23 270 292 270 292 0.97 9 18 1.4e-06 0.00026 22.5 0.0 1 23 298 320 298 320 0.98 10 18 1.7e-05 0.0032 19.1 0.2 1 23 407 429 407 429 0.98 11 18 0.00014 0.026 16.2 0.4 1 23 431 454 431 454 0.93 12 18 2e-05 0.0038 18.9 0.1 2 23 461 483 461 483 0.95 13 18 6.1e-06 0.0011 20.5 0.2 1 23 486 509 486 509 0.94 14 18 6.7e-05 0.013 17.2 4.3 2 23 515 536 514 537 0.93 15 18 0.00065 0.12 14.1 1.8 3 23 544 564 544 564 0.97 16 18 0.13 24 6.9 0.1 2 11 571 580 570 593 0.90 17 18 2.9e-06 0.00055 21.5 4.2 2 23 599 620 598 620 0.96 18 18 0.0062 1.2 11.0 0.9 1 23 626 648 626 648 0.98
Sequence Information
- Coding Sequence
- atgaaaggtcCATCGTCCGCGACGATCGCGGTAACGAAAGCGATAATCTGGAAGAGAACGACACGCTCGACCACGCGAAAATTACAATTGCCCGATAAAACGAGCACCGAAAAATCCTCGAAAATCTCGCACCGTTGGTGTCGCGATCTCATCGTGCccattaagaaaatcaaaatcgaGGGAAGTCCCAAAAGTATAATCACCGAGGACCTGATATTAAAGTCAGAATTCACTTGCAGCAAATGCGGTCAGGTCTTCGACGATCCGCTGGAGTTGCAAAGCCACTCGAAGAACCACGCGTTCTGCTGCGATCATTGCAACGAGTCGTTCCGTCTGCGCGTGCAATTGCTAAAGCACATAACCAATGCTCACAAATCCGTCTCGAAGTACTTCTGCACCGAATGCGAGAACGCGTTCTCGTCTCGTCAGTCTTTGCAGATGCACTTCGTGCGCAAACACACCGAGGGCTCGCGTTTCACTTGCGCTACCTgtgaaaagaaattcaaaataaagcACGATCTTTACATGCACATAAAAAACGTCCACAACGACAAGCGCGAGGCCGTCTGCGACGTGTGCGGTAAAACCTATCGCAACGCGTCCGTTCTTAGAAGTCACCGGACCAAAGCTCACAATCAGCATCCTTACGCCTGCGAGATCTGCAAGCTCAAGCTCGCTACGATGAAATCCCTCGAGAAACACGTGCAGCTTCATTTGAGAAAAAAGCAAGTGGTGTGCCAGATATGCGGAAAAACGTTCACTGGTCACCTCAAAAGACACATGGACGTACACATCGGCGTCAAGCCGCATTCTTGCAAAGTTTGCGGTAAAGCTTTCAGACGGCGAAATACGTACAAGCAGCATTTGCTCACTCATACTGATGCCAGGGCTTACGAATGCGACATTTGCGGCGAGAGCTTCGCGCAAAAGGCGGGACTCATCGCGCACAGGAAGCAGCATCCGGGACCGTTGCCACCGCTTCCGCCGATTTCGATAGACTTCGTCATTGCCGATCTTTTATACGGAGACAACGAATTGTCGGATTCTCttattggaaaaataataataatgccaTTAGTCGTCGGAATAAGAGATGAATTCTCGAAGAGAATTTCACCGGACGAACGGAACGATGACGATGCGTcgcgaaaaaaaatcaaaatcgacGAGGAATTTCTAAAAGACGTAAACGCCGATGAATTGACTTTAAAAATCGAATACCCGTGCAGCAGATGCGGTATGGGCTTTAGAAATCCTAAACAGCTACAGCTTCACGCAAAGATTCACGCTTACAGCTGCGATATTTGCGACGAGTCGTTCCGCATACATAAGGAATTGCAAGATCACATATCCGACGCGCACAAATCCAATCCGATAAACGTTTGCGTCGAGTGCGGAAAAGTGTACAAAACGAAGCCACAACTCGCTAAGCATCTCGAGAGCCCGCACGAGCGCTACGAATGCGCGGAGTGCGGGCAAGTATTCAAAACGAAGGAGTCACTTTACAACCACATTATCGATTCCCACGAAATAAGCAAGACCAGCTGCGAGGCGTGCGATAAAACCTTTACTCATCTGTCCAGCCTTAGAAAGCACCAGGCCAATCATCACAATCAGCATCTGCAATGGTGCGAGATCTGCAAGCGGAATTTCGTCAGTAAGGAATCCCTTCAACAGCACGTTCACCTTCATCTGAACAATAAGAGAAGCGTCTGCCCTAATTGCGGAAAAATGTTCGCCAAGGTTTTCGTCGATCAACGCATGAGAAACGTACACGTCTGCGCCAGTCCGTTATCTTGCAAAATATgcggaaaaaaattcaaacgccAGTACATGCTCAAGCATCATTTGTACAGTCACATCGATAGCGTGCCTTACGCCTGTGACATTTGCGACATGAGGCATACGCAAAAGTTGGAATTGATCGCGCATAGAAAGACGCATCCGGGACCGTTGCCGCCGCTTCCACCAGACCTTACGATCGACGAACTCGTCGCCGATATTTTGCAGAAAATCAATGACAAGCCGTTGAATGATCGATGA
- Protein Sequence
- MKGPSSATIAVTKAIIWKRTTRSTTRKLQLPDKTSTEKSSKISHRWCRDLIVPIKKIKIEGSPKSIITEDLILKSEFTCSKCGQVFDDPLELQSHSKNHAFCCDHCNESFRLRVQLLKHITNAHKSVSKYFCTECENAFSSRQSLQMHFVRKHTEGSRFTCATCEKKFKIKHDLYMHIKNVHNDKREAVCDVCGKTYRNASVLRSHRTKAHNQHPYACEICKLKLATMKSLEKHVQLHLRKKQVVCQICGKTFTGHLKRHMDVHIGVKPHSCKVCGKAFRRRNTYKQHLLTHTDARAYECDICGESFAQKAGLIAHRKQHPGPLPPLPPISIDFVIADLLYGDNELSDSLIGKIIIMPLVVGIRDEFSKRISPDERNDDDASRKKIKIDEEFLKDVNADELTLKIEYPCSRCGMGFRNPKQLQLHAKIHAYSCDICDESFRIHKELQDHISDAHKSNPINVCVECGKVYKTKPQLAKHLESPHERYECAECGQVFKTKESLYNHIIDSHEISKTSCEACDKTFTHLSSLRKHQANHHNQHLQWCEICKRNFVSKESLQQHVHLHLNNKRSVCPNCGKMFAKVFVDQRMRNVHVCASPLSCKICGKKFKRQYMLKHHLYSHIDSVPYACDICDMRHTQKLELIAHRKTHPGPLPPLPPDLTIDELVADILQKINDKPLNDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -