Csis001275.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465094.1:22359277-22362902[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-12 6.9e-09 36.6 0.0 2 42 18 58 17 60 0.94 2 2 1 3.2e+03 -0.8 0.0 12 22 105 115 102 116 0.85
Sequence Information
- Coding Sequence
- ATGCCCACCTTTTATAAACGAGAAGGCACTTCTGGAAGAGGAGAATGGTTGgaggaaaatttgaaaagtgcAGTTAAAGCAGTCAAGAATGCACAAATGGGAATCAATGCTGCAGCAAAAGCGTTCGGCATACCTAAAACCACTTTTAAAAGGCGGCTGAAAtcaaaaatgtttaacaaaGGTTCAATGGGTAAAGACTGCTTACAATCAGTACGTTCAATGGCGTACTATTTCGCTGAAAGCCTGCAACTGAAACATAATTTCAGTCATGAAACTAAGCAAGCCGGTTATGATTGGCTTTCTGCCTTTCTTGTCCGTAATTCAGAACTTTCTATCCGGCAAGCAGAAGGAAAAGTAGTTGCCTTGAAAGTTTCGAAAAATGTGACTTGTGTTACATCAGCAGAAAAGGGTGAGACTATATCTATATTGGCATGTGTTAATGGAGAGGGTATATTCTTACCACCTTACTGCATAATGAAAGGTAAGAACCTAAAGCAGGAATTTTGTGACGGTTTGCCTCCTGGGTCCGAAGTAAAAATGTCTCCCAAGTCCGGCTATGTAAATAGTGATCTATTTTATGATTGGTTGAAAACCCATTTCACTCCTAGGAAACCAGCAGGAAAAGTAGTGCTTGTTCTAGATGGACACACATTGCATACTAGTAACATTGAGATGTTGGAGTTTGCGGAAAGCaatgatattattttgattattccTCCTCATACCAGCCATTGGCTTCAGCCGTTGGATCGTGcttttttcaaatcattaaaATCAAACTACTATGTTGCTTGCTCTAACTACGTGACCAATAATCCTTCAAGAAAGATAACCCGGCTGCAGTTTGGCGCTCTTCTCAACTTAGCGTGGGGTAAGTCAGCAAACGTAGACAATGGAACAAGTGCTTTTAGAACATGTGGTATCATTCCTTTTGATGCTGATGCGATACCAGACTATGCTTTTCTGTCAGAACCCACAGAATTCAGCTGCCTAGATAAATCCATTCTGACACAAACTGATACATCCAATATTATTTCTGCTAGTTCAAGTTGTTCAAGAAACGATGACACTCTGGTTCTTCCTAGTTGCTTTAGAAAGGATATTAGTCCTGTTGCTTCAACAAGCTATGACAATGCTCCTGTACTTGAATCTTCTGAAAAACAATTAGACAAAATATCTGCAAATGTAACCCCTACAAATTTATTGGATGAAATACATCCAATTCCTTCGGTCAACAATGTTCAGACTCTGAGAAGAAAGCTTTCAAGCATATCAACAGTTTTAAGCTCGCCGGAAAATATAACTGCCCTTAAGaagaagcaaaaggAGAGAGAGTATACGTCATCTTCAGAATCTGATATTGATATTGAAGCAATTTGCGACGACGATCTCCATGAAAGTGACTGGAATGACGATTGTTGTGTATGGTGTGAAGAAAACTACAACGAAACAAAACGAGATGAAGATTGGATAAAGTTTATCTTGGAAGATCCTTATGAAGATCCAGAAGGTCTTATATTACCAGATAGAAGTTCAAAACCAGCAAAAGAAGCATTAATGGTTTGTTTATATTTCATCAGATTATAA
- Protein Sequence
- MPTFYKREGTSGRGEWLEENLKSAVKAVKNAQMGINAAAKAFGIPKTTFKRRLKSKMFNKGSMGKDCLQSVRSMAYYFAESLQLKHNFSHETKQAGYDWLSAFLVRNSELSIRQAEGKVVALKVSKNVTCVTSAEKGETISILACVNGEGIFLPPYCIMKGKNLKQEFCDGLPPGSEVKMSPKSGYVNSDLFYDWLKTHFTPRKPAGKVVLVLDGHTLHTSNIEMLEFAESNDIILIIPPHTSHWLQPLDRAFFKSLKSNYYVACSNYVTNNPSRKITRLQFGALLNLAWGKSANVDNGTSAFRTCGIIPFDADAIPDYAFLSEPTEFSCLDKSILTQTDTSNIISASSSCSRNDDTLVLPSCFRKDISPVASTSYDNAPVLESSEKQLDKISANVTPTNLLDEIHPIPSVNNVQTLRRKLSSISTVLSSPENITALKKKQKEREYTSSSESDIDIEAICDDDLHESDWNDDCCVWCEENYNETKRDEDWIKFILEDPYEDPEGLILPDRSSKPAKEALMVCLYFIRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -