Csis009872.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- -
- Assembly
- GCA_949987625.1
- Location
- OX465095.1:23576124-23577996[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-12 4.6e-09 37.1 0.1 1 42 17 58 17 61 0.94 2 2 0.72 2.3e+03 -0.3 0.0 12 22 105 115 102 123 0.82
Sequence Information
- Coding Sequence
- ATGCCCACCTTTTATAAACGAAAAGGCACTTCTGGAAGAGGAGAATGTTCGgaggaaaatttgaaaagtgcAGTTAAAGCAGTCGAGAATACACAAATGGGAATCAATGCTGCAGCAAAAGCGTTTGGCATACCTAAAACCACTTTTAAAAGGCGGCTGAAATCAAAAATGTTCAACAAAGCTTCAATGGGTAAAGACTGCTTACAATCAGTACGTTCAATGGCGTACTATTTCGCTGAAAGCCTGCAACTAAAACATAATTTCAGTCATGAAACTAAGCAAGCTGGTTATGATTGGCTTTCTGCCTTTCTTGTCCGTAATTCAGAACTTTCTATCCGGCAAGCAGAAGGAGTATCAGTTGCAAGAGCAAAAGGCTTAAACAAACAAGACGTCAAAGAATACTTCgaccttttaaaaaatgtcttgGTGGAGAATGACCTAATAGGAAAACCtggcaatatttttaatatggaTGAGACAGGTTTACAATTAAACAACAAACCTGGGAAAGTAGTTGCCTTGAAAGGTTCGAAAAATGTGATTTGTGTTACATCAGCAGAAAAGGGTGAGACTATATCTATATTGGCATGTGTTAATGGAGAGGGTATATTCTTACCACCTTACTGCATAATGAAAGGTAAGAACCTAAAGCAGGAATTTTGTGACGGTTTGCCTCCTGGGTCCGAAGTAAAAATGTCTCCCAAGTCCGGCTATGTAAATAGTGATCTATTTTACGATTGGTTGAAAACCCATTTCACTCCTAGGAAACCAGCAGGAAAAGTACTGCTTCTTCTAGATGGACACACATCGCATACTAGTAACATTGAGATGTTGGAGTTTGCGGAAAGCAATGATATTATTTTGATGGCGTGGGGTAAGTCAGCAAACGTAGACAATGGAACAAGTGCTTTTAGAACATGTGGGATCATTCCTTTTGATGCTGATGCGATACCAGACTATGCTTTTCTGTCAGAACCCACAGAATTCAGCTGTCTAAATAAATCCATTCTGATACAAACTGATACATCCAATATTATTTGTGCTAGTTCAAGTTGTTCAAGAAACGATGACACTCTGGTTCTTCCTGGTTGCTTTAGAAGAGATATTAGTCCTGTTGCTTCAACAAGCTATGACAATGCTCCTGTACTTGAATCTTCTAAAAAACAATTAGACAAAATATCTGCAAATGTAACCCCTACAAATTTATTGGATGAAATACATCCAATTCCTTCGGTCAACAATGTTCAGACTCTGAGAAGCAAGGTTCCAAGCATATCAACAGTTTTAAGCTCGCCGGAAAATATAACTGCCCTTAAGCAATTTGCGACGACGATCTCCATGAAAGTGACTGGAATGACGATTGTTGTGTATGGTGTGAAGAAAACTACAACGAAACAAAACGAGATGAAGATTGGATAA
- Protein Sequence
- MPTFYKRKGTSGRGECSEENLKSAVKAVENTQMGINAAAKAFGIPKTTFKRRLKSKMFNKASMGKDCLQSVRSMAYYFAESLQLKHNFSHETKQAGYDWLSAFLVRNSELSIRQAEGVSVARAKGLNKQDVKEYFDLLKNVLVENDLIGKPGNIFNMDETGLQLNNKPGKVVALKGSKNVICVTSAEKGETISILACVNGEGIFLPPYCIMKGKNLKQEFCDGLPPGSEVKMSPKSGYVNSDLFYDWLKTHFTPRKPAGKVLLLLDGHTSHTSNIEMLEFAESNDIILMAWGKSANVDNGTSAFRTCGIIPFDADAIPDYAFLSEPTEFSCLNKSILIQTDTSNIICASSSCSRNDDTLVLPGCFRRDISPVASTSYDNAPVLESSKKQLDKISANVTPTNLLDEIHPIPSVNNVQTLRSKVPSISTVLSSPENITALKQFATTISMKVTGMTIVVYGVKKTTTKQNEMKIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -