Csis008683.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- lov
- Assembly
- GCA_949987625.1
- Location
- OX465095.1:3344829-3347134[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-06 0.0047 17.9 0.1 1 40 201 240 201 245 0.87 2 4 8.7e-13 2.8e-09 37.8 0.0 2 42 252 292 251 295 0.85 3 4 0.0014 4.4 8.4 0.0 7 34 309 335 308 341 0.79 4 4 1.4e-12 4.4e-09 37.2 0.0 4 44 366 406 363 407 0.91
Sequence Information
- Coding Sequence
- ATGTCTGAGTCGTTAGCTCCGGAGACGAACGACCAGACGCCAGTTGATGCTTCATATTGTTTTAAATGGAGCAATTATCAAAATCATCTTTCCGAAGTTGTGAGACAACTTCTCGAAGAAGAATGTATGGTCGACGTGACGCTCTACGCCGGTGGCGAGCGTATCCAAGCTCATCGACTTGTTTTATGCGCTTGCAGCACCTTGTTTCAAgaAATTCTAAGCGAAGTTAACGAAGAACATCCTACTATAATTCTGAGCGACATATCTGCACAAGATGTTAGATCCATTGTAGAATTTAGTTATAATGGAGAAGTTAGAATACctgttgaaaatataaataatttattagatgcTGCACATTCTTTGAAAATATGCGGCTTAATGGAAatcgATGGTCTTGAcgaattagaaataaataatgaaagcgATCTAAAAACTGAATCAGACATTttgaatgaattaataaaagaagatgaagaagaaatgCAAATGTATGATATGATAAATGATGAAAGTGATaaggggaaaaaaagaaaaatttcagaTTCAGAAACAGAAATACataaaaggagaagaaaaagtgtatgtaaaaaagaatatacagATGAAATGTTAGCAGCTGCTATTACTGATATTCGTGCCGGACGAACGTTATTAGAAGCAGCTTCTAGGAATCATATTCCTAGATCTACACTTTATATGCGTGCAAAAGCATTGAAAATACCTTTGAATCCTTCTAGAAATGAATATACCACTGAGGATATGAAAGCAGCAATACAAACAGTTCTtgctGGATCTAGTTTACAACAAGCTTCAGATATGTATGGGATCCCAAAAACAGTTTTATGGAGGAGGATACAAAAAGAAGGCTATCATTCAGCTAGAcacgaaacaagaaaaaattatggTGCTGAAAGAAGAGAAGCTGCTGTAAGAGCTTTAGAGAGGGGAGAAACTCTTACAAAAGTTGCAAATGAATATAAGattCCAAAAACAACGCTATTTCGAGACAAAGCTCGGTTAGTGGATCAAGGAAAATTGCCACTatctttttggaaaaaaagaaaaactgaaaGCGAAGACCAGAAACGATCTCGATTAGAAGAAGCAGTTGCTGCATGCAAAGATGGTAAAATGTCTCAAGCAACAGCATCTGTAACTTATCAAATACCTAAAACTACTATATGGAGACgcttacaaaaagaaattgacaGAAAAACGATACCAATAAAAAAACAGTTACAAAAAAATGAACTTGATGATGTAAAAAGTCCAGAAATTGTTAAAGCAGAAGATTTAAATGAAACAGATTTTGAAGCATATTGCCAAGCTGATACAGAAATGAATATCACATATatagatgaaaataatgaaatatcagACGACCCTGTGATAATTCTTACAAGTGGAGATGTAGAAGAACTTAATTTACCAAATAGATCGTTGGTGGTAGTGCATGaaggcactgatgaaaattttatatcatgtGGTTTAGAATTAGACGAAACTGAAACATTTGAATCCAAAAGTTAA
- Protein Sequence
- MSESLAPETNDQTPVDASYCFKWSNYQNHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSEVNEEHPTIILSDISAQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIDGLDELEINNESDLKTESDILNELIKEDEEEMQMYDMINDESDKGKKRKISDSETEIHKRRRKSVCKKEYTDEMLAAAITDIRAGRTLLEAASRNHIPRSTLYMRAKALKIPLNPSRNEYTTEDMKAAIQTVLAGSSLQQASDMYGIPKTVLWRRIQKEGYHSARHETRKNYGAERREAAVRALERGETLTKVANEYKIPKTTLFRDKARLVDQGKLPLSFWKKRKTESEDQKRSRLEEAVAACKDGKMSQATASVTYQIPKTTIWRRLQKEIDRKTIPIKKQLQKNELDDVKSPEIVKAEDLNETDFEAYCQADTEMNITYIDENNEISDDPVIILTSGDVEELNLPNRSLVVVHEGTDENFISCGLELDETETFESKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00309608;
- 90% Identity
- iTF_00309608;
- 80% Identity
- iTF_00309608;