Basic Information

Insect: Chaetogeoica ovagalla
Gene Symbol: gli4
Assembly: GCA_032441825.1
Location: CM063731.1:5783573-5795437[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.58 59 4.7 1.2 3 23 262 285 260 285 0.90

2 5 0.038 3.9 8.4 0.2 1 23 293 320 293 320 0.90

3 5 0.00028 0.029 15.2 2.6 1 23 326 350 326 350 0.97

4 5 0.00032 0.033 15.0 1.1 1 23 356 381 356 381 0.97

5 5 8e-06 0.00082 20.0 0.3 1 23 387 412 387 412 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.58	59	4.7	1.2	3	23	262	285	260	285	0.90
2	5	0.038	3.9	8.4	0.2	1	23	293	320	293	320	0.90
3	5	0.00028	0.029	15.2	2.6	1	23	326	350	326	350	0.97
4	5	0.00032	0.033	15.0	1.1	1	23	356	381	356	381	0.97
5	5	8e-06	0.00082	20.0	0.3	1	23	387	412	387	412	0.96

Sequence Information

Coding Sequence: ATGATTGGCGTATACTTAAGTTGCGGCGTCGGTGGATCAGGTGACTTGTTGTCGCGGAGGGGGGCGGGTGGCGTCCTGCCGCCGCACCATCCGCACCCCCATCCTGCTGATTTCTCCCATCCGCTTCGCTTCAACTGTATGGATATCTGTTCGTCGTTCGCTACAGTCGGATCTCTGAGTTCGGGCCTGTGCAGTCCGTTGGCGCAGAGCTTCTCGCGCCAAGGCAAGAAACGGGCGCTGTCCGTGTCTCCGTCCCCGGATCTGGAACTCCATGGCCGGATCCGATCGTCGCCGAGCGCGTTGTACTCGGCCGCCGCGGCGTACGGCGCGTCGTGTTCCCGGAGTTCCAGCACGTCCGGCTCGTACGGCCACCTCAACCCGCTGGCGTTCACCATGCAACACCACCCGTCCGTCATATCGCCGCAGGTGCAACAGTTGCTGCGATCGGCCGGCGGGCTGCACTTGCCGTGGCATAACGCCGCGGCCATGCCGTCGGCCGCCCATCACGCGTCGTACAACATACACATGTTGCCGGTGCCCACGCTCGACACGTCGCACAACGTGTcagcgacggcggcggcggcggcggcagcggcagcggcggcggcggtcaaCGACATGTGCAAGCCGCCGAAGCACGAGCGTGCCAAGTCCAAGTCGGGCTCAAAGAAATCGTCTCAGAAGTTGCAACAGTCGTTGCAGGTAGCCGAAGACTCGAAACAAGACTCGCCGGAATCCGTTAGCGATCTGAAAGGGGAACTGCCGGATTTCGTCGAGACCAATTGCCACTGGAAACACTGCAATCTGGAATTCCAGACTCAGGCCGTATTGGTGCAAcACATAGTTAACGATCACATTCAGGCGAACAAAAAGTCGTTTGTATGCCAGTGGCAGGATTGTTCTAGAGACGAGAAACCGTTCAAAGCCCAGTACATGTTAGTGGTGCATATGAGGAGACACACGGGAGAGAAACCTCACAAATGCACGTTTGAAAATTGCGCCAAAGCTTATTCGAGGTTGGAAAACCTAAAAACTCATCTCAGATCTCATACCGGCGAAAAACCCTACACTTGCGAACATCCGGGTTGCAGCAAAGCTTTTAGCAATGCTTCGGACAGAGCCAAACATCAAAACCGCACACACTCCAGCGAGaaaccgTACATATGCAAAGCGCCGGGTTGCACGAAACGTTACACGGATCCCAGTTCCTTGCGCAAACACGTCAAGACGGTCCACGGGGCTGATTTCTATGCACACAAACGGCACAAAGGTAACGGCGATAACGGTCATGGAGGTGgaagtggcggcggcggcggcggaggcgGTGGAGGTACGGACGATGCGTCACCGTACAGAAGTGACGAAATGCCGATGAGTGCCAAAACCGTTAGTGTGTCTAGTCCGAGCATAAAATCCGAAGAAACTAATTCTCCGGGCCAGCAACCCAGTCCCATGAGCGTTCCGTACAACAATAGAATGTTCCACGATGAACCGATCAGTGACAGTAATCACAGCGGAGACGCTCTGGACGACAATTGGCCTGAAGACGGACCAGAAGCAGATTTGTTCGATCTCATTCCAATGCATTCGGATTCCGGAATGCTGGTGACTTCTGCCCCGATGTCCCGGAGAATTCGACGGTTCGTGCCGCACGCCGGATTGAAACACGCCGCTGCCAGCGAACTGTCGCCAATGCCGCCGGATTTGAGTCCAGGGCACGGCGGCAATTCCAGCAGCATCCAAGAATTGAACAAGCGGTTGACCGACATGAAAATGGCGTCTAATCAAGATACCGTATTACGAAGAGAAAGCACTTTTAGTAACTACTGGAGCATGAAGTCTGAATACAGTCGCAAGAACAGCTTGGCGCTATCCGAACATCATAGGTTAAGCAACGCGTCGTCCCTGTACGACCCAATCTCTGTGGATTATTCACCTAGTCAAGCGAATTCGGTCATGGGTCCTGATCTCGATGCATTTTCCGAGACGGACGAATGTAGACAACTGCAGCCAGAAAGTACCAAAATGTCCCGACCTCAAACGCATCGGACCGGCGGAGTCTCGGTACACCATCCCAATTCGAATATTAACCTCGACGAGGTCGGCGAAGGCGAATCTCTGGAAAGCAAAATGGTACTACCGGACGATTTCGACGACGTTATTAAAGACATGATAAGTGAAAAAATTGACAACTACGATCTCGACGCGTTCGACGCAGAAAAGACCATCAACGAACTGACTGAATCCGCGTTGGAACACATTCCCACGTTGACCCCGCCAATAATCCCTGACGCCGCGGGAGTCATCGCCACCGGACTGGGTAGTCCACAGGTGTTGCCCAGTCCCACGACGGTTCCCGTACCACCGCCCGCGTCAACCGACAGGCCCAAAGCGGCGGCGACTACAACCAATAGTTATCGGAACATGCGCAGCAACAGTTTGCCGGTTAATTGGCAAGGCCAGGACCAGGGCCAGGGTTTGACCAGGTCTACGTATCAGCCTCAGTTCCAAAACCAACGGCAATACCAAGCGAATCCGTTGATGCtatttaacaacaacaacaacaacaacaacaacaataacaacatgAATTGTTCGCCGATGATGCAGCAGAGGCAGAACGGTGGACGATATTCGTATTCATCGAATCAAGACTTTGTGAACTATAACCACAACTACGCGAACTTCAGACAGCAGAATCacgtgcagcagcagcagcagcagcaacagtaTCAGATGAAAAACAACGGTCAACACTATCAGAACAACAACAATCAATTTCACGATCACGGGAACGGTTATTACAACGGTGGTCAGGACGCGTACCCGGCAGCGCACAGATGTCAGGGAACGACCGGGCAAGTGGACGGTGCTGGCGGAGGAAACGGGTCCATCGTCAACGGACAGGCCAACGCGCATGGAAATATGGCGTACAATAATGGCTACTACAACAATGGAGGCTGCAACAATCAACAGTGTAACCAACAGCAGTGCGGTCAACAACAGCACAACGGCTACTACAACGGTTATCAGAGCAACAAGTTCGACAACGCTTATTCGAGGCCGAAcaatggcggcggcggcggttgtgGTAATCACCAACAGCATGgccaacagcagcagcagcagcagcagcagttcTACGTGGACTTGGACAGGAAACAGGGGACCGCGGCCGTGGTAGCGGCGGCAGTGAGTCCGATGGGAGACAGCAACTCATCGTTCCTGCAATCGCCCCGAGTACCCGCTCATGAGTTCGGCGACACCAGCAACATGGTGTTCAAGGACATGTCCACTTCGTTGAGCTCGTTGTACGACGAGAATACTTTTTTCCAAATGTCCGCCGTGTTTTCCGAATCGTAA
Protein Sequence: MIGVYLSCGVGGSGDLLSRRGAGGVLPPHHPHPHPADFSHPLRFNCMDICSSFATVGSLSSGLCSPLAQSFSRQGKKRALSVSPSPDLELHGRIRSSPSALYSAAAAYGASCSRSSSTSGSYGHLNPLAFTMQHHPSVISPQVQQLLRSAGGLHLPWHNAAAMPSAAHHASYNIHMLPVPTLDTSHNVSATAAAAAAAAAAAAVNDMCKPPKHERAKSKSGSKKSSQKLQQSLQVAEDSKQDSPESVSDLKGELPDFVETNCHWKHCNLEFQTQAVLVQHIVNDHIQANKKSFVCQWQDCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFENCAKAYSRLENLKTHLRSHTGEKPYTCEHPGCSKAFSNASDRAKHQNRTHSSEKPYICKAPGCTKRYTDPSSLRKHVKTVHGADFYAHKRHKGNGDNGHGGGSGGGGGGGGGGTDDASPYRSDEMPMSAKTVSVSSPSIKSEETNSPGQQPSPMSVPYNNRMFHDEPISDSNHSGDALDDNWPEDGPEADLFDLIPMHSDSGMLVTSAPMSRRIRRFVPHAGLKHAAASELSPMPPDLSPGHGGNSSSIQELNKRLTDMKMASNQDTVLRRESTFSNYWSMKSEYSRKNSLALSEHHRLSNASSLYDPISVDYSPSQANSVMGPDLDAFSETDECRQLQPESTKMSRPQTHRTGGVSVHHPNSNINLDEVGEGESLESKMVLPDDFDDVIKDMISEKIDNYDLDAFDAEKTINELTESALEHIPTLTPPIIPDAAGVIATGLGSPQVLPSPTTVPVPPPASTDRPKAAATTTNSYRNMRSNSLPVNWQGQDQGQGLTRSTYQPQFQNQRQYQANPLMLFNNNNNNNNNNNNMNCSPMMQQRQNGGRYSYSSNQDFVNYNHNYANFRQQNHVQQQQQQQQYQMKNNGQHYQNNNNQFHDHGNGYYNGGQDAYPAAHRCQGTTGQVDGAGGGNGSIVNGQANAHGNMAYNNGYYNNGGCNNQQCNQQQCGQQQHNGYYNGYQSNKFDNAYSRPNNGGGGGCGNHQQHGQQQQQQQQQFYVDLDRKQGTAAVVAAAVSPMGDSNSSFLQSPRVPAHEFGDTSNMVFKDMSTSLSSLYDENTFFQMSAVFSES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -